Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7920-RB through 18771 annotations produced 2 hits



(CG7920):

Annotation Number : CG7920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039737
Gbrowse : chr3R:25840263-25841086 (-) // 100.0 //
Probeset : 1628339_a_at
Accessions : protein= NP_651762; /// NP_733335;, nucleotide= NM_143505; /// NM_170456;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008411 // 4-hydroxybutyrate CoA-transferase ac
FlyMine data for FBgn0039737.
BDGP gene expression has embryonic in situ data for CG7920: 37 pix of staining in 13 body parts.
VDRC has 1 RNAi stocks for FBgn0039737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain606 484 of 4 0.80None
Head1112 734 of 4 1.50Up
Eye676 624 of 4 0.90None
Thoracicoabdominal ganglion426 564 of 4 0.60Down
Salivary gland671 224 of 4 0.90None
Crop732 324 of 4 1.00None
Midgut485 214 of 4 0.60Down
Tubule121 64 of 4 0.20Down
Hindgut809 404 of 4 1.10None
Heart1390 1414 of 4 1.85Up
Fat body1408 5614 of 4 1.88None
Ovary202 94 of 4 0.30Down
Testis467 34 of 4 0.60Down
Male accessory glands250 114 of 4 0.30Down
Virgin spermatheca75 74 of 4 0.10Down
Mated spermatheca65 64 of 4 0.09Down
Adult carcass2243 454 of 4 3.00Up
Larval CNS355 374 of 4 0.47Down
Larval Salivary gland426 654 of 4 0.57Down
Larval midgut469 534 of 4 0.63Down
Larval tubule189 364 of 4 0.30Down
Larval hindgut517 334 of 4 0.69Down
Larval fat body777 1094 of 4 1.00None
Larval trachea825 1824 of 4 1.10None
Larval carcass528 444 of 4 0.70Down
S2 cells (growing)645 254 of 4 0.86None
Whole fly750 714 of 4



(CG7920):

Annotation Number : CG7920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:25840263-25841086 (-) // 100.0 //
Probeset : 1625435_at
Accessions : protein= NP_651762; /// NP_733335;, nucleotide= NM_143505; /// NM_170456;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008411 // 4-hydroxybutyrate CoA-transferase ac


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 1.20None
Head9 13 of 4 1.40None
Eye5 01 of 4 0.77None
Thoracicoabdominal ganglion7 10 of 4 1.00None
Salivary gland14 30 of 4 2.11None
Crop9 31 of 4 1.30None
Midgut15 43 of 4 2.10None
Tubule4 10 of 4 0.60Down
Hindgut10 10 of 4 1.40None
Heart7 12 of 4 1.07None
Fat body18 34 of 4 2.65Up
Ovary3 11 of 4 0.50None
Testis3 10 of 4 0.50None
Male accessory glands9 20 of 4 1.30None
Virgin spermatheca4 10 of 4 0.63None
Mated spermatheca5 10 of 4 0.81None
Adult carcass10 31 of 4 1.60None
Larval CNS3 21 of 4 0.53None
Larval Salivary gland5 20 of 4 0.77None
Larval midgut8 21 of 4 1.15None
Larval tubule5 20 of 4 0.80None
Larval hindgut4 00 of 4 0.59None
Larval fat body11 12 of 4 1.70None
Larval trachea4 30 of 4 0.60None
Larval carcass7 10 of 4 1.03None
S2 cells (growing)6 22 of 4 0.86None
Whole fly7 11 of 4

Looking for CG7920-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime