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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7921-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:25841226-25847980 (-) // 100.0 //):

Annotation Number : CG7921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1633061_at
Accessions : protein= EC:2.4.1.- /// EC:2.4.1.143, nucleotide=
Interpro : 0006496 // protein amino acid terminal N-glycosylation // non-traceable author statement /// 0009312 // oligosaccharide
Homophila reports that CG7921 is a close match (1e-60) to human gene CDGS2;MGAT2 (NP_002399), a gene associated with Carbohydrate-deficient glycoprotein syndrome, type II, 212066 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain654 ± 94 of 410.80Up
Head182 ± 34 of 4 3.00Up
Eye181 ± 104 of 4 3.00Up
Thoracicoabdominal ganglion936 ± 704 of 415.50Up
Salivary gland418 ± 504 of 4 6.92Up
Crop99 ± 174 of 4 1.60None
Midgut33 ± 31 of 4 0.50Down
Tubule42 ± 43 of 4 0.70Down
Hindgut256 ± 104 of 4 4.20Up
Heart174 ± 84 of 4 2.88Up
Fat body52 ± 173 of 4 0.87None
Ovary15 ± 11 of 4 0.30Down
Testis116 ± 84 of 4 1.90Up
Male accessory glands64 ± 34 of 4 1.10None
Virgin spermatheca40 ± 34 of 4 0.68Down
Mated spermatheca46 ± 54 of 4 0.76None
Adult carcass196 ± 374 of 4 3.20Up
Larval CNS241 ± 164 of 4 3.99Up
Larval Salivary gland44 ± 52 of 4 0.73None
Larval midgut28 ± 30 of 4 0.47Down
Larval tubule94 ± 64 of 4 1.60Up
Larval hindgut84 ± 54 of 4 1.39Up
Larval fat body52 ± 62 of 4 0.90None
Larval trachea86 ± 294 of 4 1.44None
Larval carcass56 ± 73 of 4 0.94None
S2 cells (growing)106 ± 94 of 4 1.76Up
Whole fly60 ± 44 of 4

Looking for CG7921-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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