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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7933-RA through 18771 annotations produced 1 hits



janus A (janA):

Annotation Number : CG7933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001280
Gbrowse : chr3R:25864338-25865259 (-) // 100.0 //
Probeset : 1623271_a_at
Accessions : protein= NP_788762; /// NP_788763; /// NP_996311;, nucleotide= NM_176585; /// NM_176586; /// NM_206588;
FlyMine data for FBgn0001280.
BioGrid reports that CG7933 interacts with CG8065 CG8942 .
TRiP has 1 RNAi stocks for FBgn0001280 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 ± 64 of 4 0.50Down
Head251 ± 84 of 4 0.60Down
Eye287 ± 64 of 4 0.72Down
Thoracicoabdominal ganglion192 ± 84 of 4 0.50Down
Salivary gland294 ± 44 of 4 0.74Down
Crop376 ± 84 of 4 0.90None
Midgut172 ± 74 of 4 0.40Down
Tubule224 ± 74 of 4 0.60Down
Hindgut201 ± 24 of 4 0.50Down
Heart321 ± 124 of 4 0.80None
Fat body254 ± 84 of 4 0.64Down
Ovary545 ± 94 of 4 1.40Up
Testis1042 ± 94 of 4 2.60Up
Male accessory glands267 ± 194 of 4 0.70Down
Virgin spermatheca333 ± 104 of 4 0.83None
Mated spermatheca294 ± 154 of 4 0.74Down
Adult carcass241 ± 124 of 4 0.60Down
Larval CNS615 ± 154 of 4 1.54Up
Larval Salivary gland420 ± 114 of 4 1.05None
Larval midgut107 ± 34 of 4 0.27Down
Larval tubule285 ± 134 of 4 0.70Down
Larval hindgut205 ± 44 of 4 0.51Down
Larval fat body364 ± 234 of 4 0.90None
Larval trachea565 ± 594 of 4 1.41Up
Larval carcass346 ± 154 of 4 0.87None
S2 cells (growing)525 ± 34 of 4 1.31Up
Whole fly399 ± 294 of 4

Looking for CG7933-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime