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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7940-RA through 18771 annotations produced 1 hits



CG7940 (Arp5):

Annotation Number : CG7940
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038576
Gbrowse : chr3R:14011240-14013594 (+) // 100.0 //
Probeset : 1622928_at
Accessions : protein= NP_650684;, nucleotide= NM_142427;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005884 // actin filament // inferred from sequence or str
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity /// 0005515 // prot
FlyMine data for FBgn0038576.
BDGP gene expression has embryonic in situ data for CG7940: 19 pix of staining in 9 body parts.
Homophila reports that CG7940 is a close match (1e-16) to human gene ACTC1;CMD1R;CMH11 (NP_005150), a gene associated with Cardiomyopathy, dilated, 1R (3);Cardiomyopathy, familial hypertrophic, 11, 612098 (3).
BioGrid reports that CG7940 interacts with CG8725 .
TRiP has 1 RNAi stocks for FBgn0038576 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038576 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 24 of 4 1.40Up
Head49 ± 54 of 4 0.70Down
Eye50 ± 24 of 4 0.71Down
Thoracicoabdominal ganglion104 ± 34 of 4 1.50Up
Salivary gland63 ± 134 of 4 0.88None
Crop47 ± 44 of 4 0.70Down
Midgut39 ± 34 of 4 0.50Down
Tubule56 ± 44 of 4 0.80Down
Hindgut49 ± 44 of 4 0.70Down
Heart25 ± 24 of 4 0.35Down
Fat body29 ± 71 of 4 0.41Down
Ovary107 ± 54 of 4 1.50Up
Testis206 ± 74 of 4 2.90Up
Male accessory glands76 ± 24 of 4 1.10None
Virgin spermatheca65 ± 34 of 4 0.91None
Mated spermatheca66 ± 24 of 4 0.93None
Adult carcass36 ± 32 of 4 0.50Down
Larval CNS151 ± 64 of 4 2.12Up
Larval Salivary gland75 ± 24 of 4 1.05None
Larval midgut39 ± 14 of 4 0.55Down
Larval tubule43 ± 24 of 4 0.60Down
Larval hindgut54 ± 14 of 4 0.76Down
Larval fat body34 ± 73 of 4 0.50Down
Larval trachea73 ± 44 of 4 1.03None
Larval carcass44 ± 34 of 4 0.61Down
S2 cells (growing)81 ± 14 of 4 1.14Up
Whole fly71 ± 24 of 4

Looking for CG7940-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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