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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7945-RB through 18771 annotations produced 1 hits



(CG7945):

Annotation Number : CG7945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036505
Gbrowse : chr3L:15514801-15517199 (-) // 100.0 //
Probeset : 1626823_a_at
Accessions : protein= NP_648773; /// NP_730051; /// NP_996094;, nucleotide= NM_140516; /// NM_168624; /// NM_206372;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0036505.
BDGP gene expression has embryonic in situ data for CG7945: 4 pix of staining in 1 body parts.
BioGrid reports that CG7945 interacts with CG7970 CG8965 CG7945 CG9331 CG9553 CG9784 CG9975 .
TRiP has 1 RNAi stocks for FBgn0036505 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain368 ± 54 of 4 1.80Up
Head272 ± 124 of 4 1.30Up
Eye685 ± 294 of 4 3.39Up
Thoracicoabdominal ganglion371 ± 54 of 4 1.80Up
Salivary gland187 ± 114 of 4 0.93None
Crop308 ± 64 of 4 1.50Up
Midgut163 ± 64 of 4 0.80Down
Tubule210 ± 74 of 4 1.00None
Hindgut215 ± 114 of 4 1.10None
Heart243 ± 114 of 4 1.20Up
Fat body113 ± 174 of 4 0.56Down
Ovary282 ± 64 of 4 1.40Up
Testis585 ± 94 of 4 2.90Up
Male accessory glands196 ± 34 of 4 1.00None
Virgin spermatheca166 ± 14 of 4 0.82Down
Mated spermatheca177 ± 64 of 4 0.88Down
Adult carcass173 ± 34 of 4 0.90Down
Larval CNS226 ± 154 of 4 1.12None
Larval Salivary gland320 ± 114 of 4 1.58Up
Larval midgut134 ± 24 of 4 0.67Down
Larval tubule280 ± 84 of 4 1.40Up
Larval hindgut168 ± 34 of 4 0.83Down
Larval fat body318 ± 304 of 4 1.60Up
Larval trachea262 ± 104 of 4 1.30Up
Larval carcass181 ± 144 of 4 0.90None
S2 cells (growing)341 ± 24 of 4 1.69Up
Whole fly202 ± 04 of 4

Looking for CG7945-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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