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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7948-RA through 18771 annotations produced 1 hits



Spindle-A (spn-A):

Annotation Number : CG7948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003479
Gbrowse : chr3R:25880412-25881767 (-) // 100.0 //
Probeset : 1640738_a_at
Accessions : protein= NP_524583; /// NP_733342;, nucleotide= NM_079844; /// NM_170463;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000150 // recombinase activity // inferred from sequence or structural similarity /// 0000166 // nucleotide binding //
FlyMine data for FBgn0003479.
Homophila reports that CG7948 is a close match (5e-14) to human gene XRCC3 (NP_005423), a gene associated with {Breast cancer, susceptibility to} (3);{Melanoma, cutaneous malignant, susceptibility to} (3).
BioGrid reports that CG7948 interacts with CG8667 .
TRiP has 2 RNAi stocks for FBgn0003479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 0.40Down
Head36 24 of 4 0.40Down
Eye41 34 of 4 0.42Down
Thoracicoabdominal ganglion52 14 of 4 0.50Down
Salivary gland34 82 of 4 0.34Down
Crop61 14 of 4 0.60Down
Midgut44 24 of 4 0.40Down
Tubule35 14 of 4 0.40Down
Hindgut46 14 of 4 0.50Down
Heart32 14 of 4 0.32Down
Fat body27 70 of 4 0.28Down
Ovary179 114 of 4 1.80Up
Testis59 34 of 4 0.60Down
Male accessory glands54 74 of 4 0.50Down
Virgin spermatheca32 23 of 4 0.33Down
Mated spermatheca33 14 of 4 0.34Down
Adult carcass43 51 of 4 0.40Down
Larval CNS85 154 of 4 0.86None
Larval Salivary gland45 33 of 4 0.46Down
Larval midgut46 24 of 4 0.47Down
Larval tubule77 54 of 4 0.80Down
Larval hindgut56 14 of 4 0.57Down
Larval fat body55 34 of 4 0.60Down
Larval trachea73 64 of 4 0.74Down
Larval carcass44 24 of 4 0.45Down
S2 cells (growing)170 24 of 4 1.72Up
Whole fly99 34 of 4

Looking for CG7948-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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