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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7955-RA through 18771 annotations produced 1 hits



CG7955 (ABCB7):

Annotation Number : CG7955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035244
Gbrowse : chr3L:1618391-1623412 (+) // 100.0 //
Probeset : 1638547_s_at
Accessions : protein= NP_647634; /// NP_728642; /// NP_728643;, nucleotide= NM_139377; /// NM_167902; /// NM_167903;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016021 // integral to me
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0035244.
BDGP gene expression has embryonic in situ data for CG7955: 4 pix of staining in 1 body parts.
Homophila reports that CG7955 is a close match (9e-11) to human gene ABCG8 (NP_071882), a gene associated with Sitosterolemia, 210250 (3).
VDRC has 3 RNAi stocks for FBgn0035244 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 24 of 4 1.70Up
Head88 94 of 4 1.10None
Eye104 134 of 4 1.30None
Thoracicoabdominal ganglion154 104 of 4 1.90Up
Salivary gland284 224 of 4 3.53Up
Crop118 54 of 4 1.50Up
Midgut159 84 of 4 2.00Up
Tubule337 44 of 4 4.20Up
Hindgut101 34 of 4 1.30Up
Heart200 104 of 4 2.49Up
Fat body255 254 of 4 3.16Up
Ovary123 44 of 4 1.50Up
Testis79 34 of 4 1.00None
Male accessory glands80 34 of 4 1.00None
Virgin spermatheca240 124 of 4 2.98Up
Mated spermatheca222 194 of 4 2.76Up
Adult carcass106 24 of 4 1.30Up
Larval CNS106 114 of 4 1.33Up
Larval Salivary gland133 74 of 4 1.65Up
Larval midgut180 214 of 4 2.24Up
Larval tubule106 74 of 4 1.30Up
Larval hindgut168 34 of 4 2.08Up
Larval fat body44 43 of 4 0.50Down
Larval trachea74 104 of 4 0.92None
Larval carcass196 254 of 4 2.44Up
S2 cells (growing)187 94 of 4 2.33Up
Whole fly80 64 of 4

Looking for CG7955-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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