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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7961-RB through 18771 annotations produced 1 hits



alpha-coatomer protein (alphaCop):

Annotation Number : CG7961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025725
Gbrowse : chr3L:1641057-1645213 (-) // 100.0 //
Probeset : 1632109_s_at
Accessions : protein= NP_477395; /// NP_728648;, nucleotide= NM_058047; /// NM_167908;
Pathway : Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport
Interpro : Golgi to ER // non-traceable author statement /// 0006911 // phagocytosis
FlyMine data for FBgn0025725.
BDGP gene expression has embryonic in situ data for alphaCop: 17 pix of staining in 26 body parts.
Homophila reports that CG7961 is a close match (2e-11) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
BioGrid reports that CG7961 interacts with CG9543 CG8942 .
TRiP has 2 RNAi stocks for FBgn0025725 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025725 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain363 ± 94 of 4 1.10Up
Head380 ± 114 of 4 1.10Up
Eye362 ± 34 of 4 1.09Up
Thoracicoabdominal ganglion403 ± 114 of 4 1.20Up
Salivary gland2169 ± 904 of 4 6.53Up
Crop466 ± 84 of 4 1.40Up
Midgut503 ± 184 of 4 1.50Up
Tubule448 ± 324 of 4 1.30Up
Hindgut470 ± 34 of 4 1.40Up
Heart435 ± 144 of 4 1.31Up
Fat body563 ± 184 of 4 1.70Up
Ovary436 ± 104 of 4 1.30Up
Testis137 ± 54 of 4 0.40Down
Male accessory glands1824 ± 444 of 4 5.50Up
Virgin spermatheca913 ± 1364 of 4 2.75Up
Mated spermatheca1185 ± 1354 of 4 3.57Up
Adult carcass388 ± 144 of 4 1.20Up
Larval CNS491 ± 94 of 4 1.48Up
Larval Salivary gland3300 ± 854 of 4 9.94Up
Larval midgut558 ± 254 of 4 1.68Up
Larval tubule532 ± 154 of 4 1.60Up
Larval hindgut676 ± 244 of 4 2.04Up
Larval fat body471 ± 284 of 4 1.40Up
Larval trachea737 ± 1224 of 4 2.22Up
Larval carcass606 ± 314 of 4 1.83Up
S2 cells (growing)1051 ± 154 of 4 3.17Up
Whole fly332 ± 34 of 4

Looking for CG7961-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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