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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7963-RA through 18771 annotations produced 1 hits



(CG7963):

Annotation Number : CG7963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037584
Gbrowse : chr3R:4188601-4189616 (+) // 100.0 //
Probeset : 1634718_at
Accessions : protein= NP_649798;, nucleotide= NM_141541;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037584.
Homophila reports that CG7963 is a close match (6e-11) to human gene GLIS2;NPHP7 (NP_115964), a gene associated with Nephronophthisis 7, 611498 (3).
VDRC has 2 RNAi stocks for FBgn0037584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.60Down
Head3 10 of 4 0.70None
Eye3 10 of 4 0.58None
Thoracicoabdominal ganglion2 00 of 4 0.40None
Salivary gland3 10 of 4 0.56None
Crop6 21 of 4 1.20None
Midgut9 20 of 4 1.70None
Tubule2 00 of 4 0.50Down
Hindgut4 10 of 4 0.70None
Heart3 10 of 4 0.61None
Fat body7 31 of 4 1.41None
Ovary4 10 of 4 0.90None
Testis3 00 of 4 0.60None
Male accessory glands4 20 of 4 0.70None
Virgin spermatheca5 10 of 4 1.05None
Mated spermatheca7 20 of 4 1.39None
Adult carcass5 20 of 4 1.10None
Larval CNS1 10 of 4 0.28Down
Larval Salivary gland6 20 of 4 1.26None
Larval midgut4 10 of 4 0.83None
Larval tubule2 00 of 4 0.50None
Larval hindgut3 00 of 4 0.62None
Larval fat body9 20 of 4 1.80None
Larval trachea5 00 of 4 0.94None
Larval carcass4 01 of 4 0.91None
S2 cells (growing)6 00 of 4 1.14None
Whole fly5 11 of 4

Looking for CG7963-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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