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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7967-RA through 18771 annotations produced 1 hits



(CG7967):

Annotation Number : CG7967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035251
Gbrowse : chr3L:1651431-1652918 (-) // 100.0 //
Probeset : 1626276_at
Accessions : protein= NP_647640;, nucleotide= NM_139383;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035251.
BDGP gene expression has embryonic in situ data for CG7967: 8 pix of staining in 1 body parts.
BioGrid reports that CG7967 interacts with CG9527 CG8359 CG8765 CG9415 CG9437 CG9471 CG9771 .
VDRC has 1 RNAi stocks for FBgn0035251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 44 of 4 1.70Up
Head346 74 of 4 1.50Up
Eye435 174 of 4 1.88Up
Thoracicoabdominal ganglion524 144 of 4 2.30Up
Salivary gland441 54 of 4 1.90Up
Crop517 154 of 4 2.20Up
Midgut411 114 of 4 1.80Up
Tubule437 164 of 4 1.90Up
Hindgut469 114 of 4 2.00Up
Heart267 124 of 4 1.16None
Fat body178 224 of 4 0.77Down
Ovary317 64 of 4 1.40Up
Testis138 64 of 4 0.60Down
Male accessory glands448 194 of 4 1.90Up
Virgin spermatheca238 44 of 4 1.03None
Mated spermatheca261 64 of 4 1.13Up
Adult carcass248 54 of 4 1.10None
Larval CNS399 164 of 4 1.72Up
Larval Salivary gland531 124 of 4 2.30Up
Larval midgut474 204 of 4 2.05Up
Larval tubule946 174 of 4 4.10Up
Larval hindgut558 344 of 4 2.41Up
Larval fat body361 314 of 4 1.60Up
Larval trachea471 384 of 4 2.04Up
Larval carcass433 274 of 4 1.87Up
S2 cells (growing)626 34 of 4 2.70Up
Whole fly231 44 of 4

Looking for CG7967-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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