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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7968-RA through 18771 annotations produced 1 hits


Annotation Number : CG7968
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028532
Gbrowse : chr2L:13849411-13850327 (+) // 100.0 //
Probeset : 1628364_at
Accessions : protein= NP_609684;, nucleotide= NM_135840;
FlyMine data for FBgn0028532.
VDRC has 1 RNAi stocks for FBgn0028532 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00None
Head3 10 of 4 0.00None
Eye6 10 of 4 0.04None
Thoracicoabdominal ganglion3 00 of 4 0.00None
Salivary gland13 71 of 4 0.09None
Crop8 10 of 4 0.10None
Midgut1789 854 of 412.10Up
Tubule714 2874 of 4 4.80None
Hindgut3 00 of 4 0.00None
Heart2 10 of 4 0.02None
Fat body3 20 of 4 0.02None
Ovary4 00 of 4 0.00None
Testis4 00 of 4 0.00None
Male accessory glands11 20 of 4 0.10None
Virgin spermatheca2 10 of 4 0.02None
Mated spermatheca1 00 of 4 0.01None
Adult carcass8 40 of 4 0.10None
Larval CNS1 00 of 4 0.01None
Larval Salivary gland8 00 of 4 0.06None
Larval midgut1602 434 of 410.86Up
Larval tubule9 11 of 4 0.10None
Larval hindgut5 10 of 4 0.04None
Larval fat body13 10 of 4 0.10None
Larval trachea4 20 of 4 0.03None
Larval carcass4 00 of 4 0.03None
S2 cells (growing)3 10 of 4 0.03None
Whole fly147 514 of 4

Looking for CG7968-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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