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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7978-RA through 18771 annotations produced 1 hits



adenylyl cyclase (Ac76E):

Annotation Number : CG7978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004852
Gbrowse : chr3L:19932385-19971060 (+) // 99.91 //
Probeset : 1628231_at
Accessions : protein= NP_524173;, nucleotide= NM_079449;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferr
FlyMine data for FBgn0004852.
Homophila reports that CG7978 is a close match (2e-19) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
VDRC has 3 RNAi stocks for FBgn0004852 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain428 ± 94 of 4 5.60Up
Head191 ± 124 of 4 2.50Up
Eye76 ± 54 of 4 1.01None
Thoracicoabdominal ganglion401 ± 134 of 4 5.30Up
Salivary gland138 ± 14 of 4 1.83Up
Crop124 ± 104 of 4 1.60Up
Midgut49 ± 44 of 4 0.70Down
Tubule143 ± 234 of 4 1.90Up
Hindgut240 ± 54 of 4 3.20Up
Heart328 ± 214 of 4 4.33Up
Fat body466 ± 484 of 4 6.15Up
Ovary6 ± 03 of 4 0.10Down
Testis6 ± 13 of 4 0.10Down
Male accessory glands42 ± 14 of 4 0.60Down
Virgin spermatheca332 ± 294 of 4 4.38Up
Mated spermatheca306 ± 144 of 4 4.04Up
Adult carcass231 ± 104 of 4 3.10Up
Larval CNS171 ± 194 of 4 2.26Up
Larval Salivary gland39 ± 64 of 4 0.52Down
Larval midgut74 ± 34 of 4 0.97None
Larval tubule95 ± 14 of 4 1.30None
Larval hindgut287 ± 134 of 4 3.78Up
Larval fat body4 ± 11 of 4 0.10Down
Larval trachea47 ± 144 of 4 0.62Down
Larval carcass865 ± 1364 of 411.40Up
S2 cells (growing)36 ± 14 of 4 0.48Down
Whole fly75 ± 74 of 4

Looking for CG7978-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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