Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7979-RA through 18771 annotations produced 1 hits



chr3L:8174022-8176470 (+) // 100.0 // ():

Annotation Number : CG7979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629109_at
Accessions : protein= , nucleotide= NP_648182;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0044237 // cellular metabolic process // inferre
FlyMine data for full length.
Homophila reports that CG7979 is a close match (2e-11) to human gene NSDHL (NP_057006), a gene associated with CHILD syndrome, 308050 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 ± 74 of 4 1.10None
Head230 ± 114 of 4 1.10None
Eye190 ± 34 of 4 0.90None
Thoracicoabdominal ganglion207 ± 54 of 4 1.00None
Salivary gland287 ± 104 of 4 1.37Up
Crop410 ± 94 of 4 2.00Up
Midgut146 ± 34 of 4 0.70Down
Tubule489 ± 424 of 4 2.30Up
Hindgut243 ± 24 of 4 1.20None
Heart235 ± 54 of 4 1.12None
Fat body307 ± 314 of 4 1.46Up
Ovary353 ± 54 of 4 1.70Up
Testis67 ± 24 of 4 0.30Down
Male accessory glands200 ± 84 of 4 1.00None
Virgin spermatheca342 ± 164 of 4 1.63Up
Mated spermatheca319 ± 104 of 4 1.52Up
Adult carcass232 ± 134 of 4 1.10None
Larval CNS196 ± 94 of 4 0.94None
Larval Salivary gland233 ± 104 of 4 1.11None
Larval midgut175 ± 54 of 4 0.83None
Larval tubule296 ± 84 of 4 1.40Up
Larval hindgut277 ± 74 of 4 1.32Up
Larval fat body223 ± 144 of 4 1.10None
Larval trachea205 ± 134 of 4 0.98None
Larval carcass264 ± 134 of 4 1.26Up
S2 cells (growing)149 ± 14 of 4 0.71Down
Whole fly210 ± 134 of 4

Looking for CG7979-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime