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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7991-RA through 18771 annotations produced 1 hits


Annotation Number : CG7991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035260
Gbrowse : chr3L:1712138-1714894 (+) // 100.0 //
Probeset : 1637888_at
Accessions : protein= NP_647649;, nucleotide= NM_139392;
FlyMine data for FBgn0035260.
VDRC has 3 RNAi stocks for FBgn0035260 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 24 of 4 5.90Up
Head12 13 of 4 2.60Up
Eye8 22 of 4 1.91None
Thoracicoabdominal ganglion23 32 of 4 5.00Up
Salivary gland25 50 of 4 5.37Up
Crop11 20 of 4 2.50None
Midgut7 20 of 4 1.70None
Tubule11 10 of 4 2.40Up
Hindgut7 20 of 4 1.60None
Heart4 10 of 4 1.05None
Fat body11 50 of 4 2.44None
Ovary8 20 of 4 1.90None
Testis7 10 of 4 1.50None
Male accessory glands10 20 of 4 2.30None
Virgin spermatheca7 00 of 4 1.68None
Mated spermatheca12 10 of 4 2.69Up
Adult carcass11 40 of 4 2.40None
Larval CNS25 34 of 4 5.39Up
Larval Salivary gland15 20 of 4 3.33Up
Larval midgut11 40 of 4 2.42None
Larval tubule8 20 of 4 1.70None
Larval hindgut11 10 of 4 2.48None
Larval fat body13 10 of 4 2.80Up
Larval trachea10 40 of 4 2.24None
Larval carcass10 10 of 4 2.22None
S2 cells (growing)16 01 of 4 3.62Up
Whole fly4 20 of 4

Looking for CG7991-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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