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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7993-RA through 18771 annotations produced 1 hits



(CG7993):

Annotation Number : CG7993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038585
Gbrowse : chr3R:14049448-14050664 (+) // 100.0 //
Probeset : 1641373_at
Accessions : protein= NP_650694;, nucleotide= NM_142437;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
FlyMine data for FBgn0038585.
BDGP gene expression has embryonic in situ data for CG7993: 25 pix of staining in 20 body parts.
VDRC has 2 RNAi stocks for FBgn0038585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 14 of 4 0.70Down
Head106 54 of 4 0.40Down
Eye83 44 of 4 0.30Down
Thoracicoabdominal ganglion156 64 of 4 0.60Down
Salivary gland126 94 of 4 0.46Down
Crop127 44 of 4 0.50Down
Midgut110 54 of 4 0.40Down
Tubule99 114 of 4 0.40Down
Hindgut88 24 of 4 0.30Down
Heart80 44 of 4 0.29Down
Fat body79 104 of 4 0.29Down
Ovary498 134 of 4 1.80Up
Testis264 94 of 4 1.00None
Male accessory glands244 114 of 4 0.90None
Virgin spermatheca79 44 of 4 0.29Down
Mated spermatheca109 84 of 4 0.39Down
Adult carcass102 64 of 4 0.40Down
Larval CNS260 224 of 4 0.94None
Larval Salivary gland162 34 of 4 0.59Down
Larval midgut73 54 of 4 0.26Down
Larval tubule66 24 of 4 0.20Down
Larval hindgut106 134 of 4 0.38Down
Larval fat body94 134 of 4 0.30Down
Larval trachea309 484 of 4 1.12None
Larval carcass136 214 of 4 0.49Down
S2 cells (growing)241 54 of 4 0.87None
Whole fly276 144 of 4

Looking for CG7993-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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