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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8001-RA through 18771 annotations produced 1 hits



(CG8001):

Annotation Number : CG8001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035268
Gbrowse : chr3L:1756158-1759209 (+) // 100.0 //
Probeset : 1625170_at
Accessions : protein= NP_001163324; /// NP_647657;, nucleotide= NM_001169853; /// NM_139400;
FlyMine data for FBgn0035268.
BDGP gene expression has embryonic in situ data for CG8001: 55 pix of staining in 14 body parts.
VDRC has 2 RNAi stocks for FBgn0035268 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 54 of 4 1.20Up
Head83 ± 44 of 4 0.80None
Eye109 ± 14 of 4 1.10None
Thoracicoabdominal ganglion141 ± 04 of 4 1.40Up
Salivary gland70 ± 04 of 4 0.71Down
Crop65 ± 34 of 4 0.70Down
Midgut59 ± 34 of 4 0.60Down
Tubule89 ± 04 of 4 0.90Down
Hindgut58 ± 34 of 4 0.60Down
Heart71 ± 24 of 4 0.72Down
Fat body74 ± 84 of 4 0.76Down
Ovary124 ± 44 of 4 1.30Up
Testis539 ± 234 of 4 5.40Up
Male accessory glands108 ± 24 of 4 1.10None
Virgin spermatheca77 ± 44 of 4 0.79Down
Mated spermatheca60 ± 24 of 4 0.61Down
Adult carcass72 ± 34 of 4 0.70Down
Larval CNS106 ± 64 of 4 1.07None
Larval Salivary gland57 ± 24 of 4 0.58Down
Larval midgut45 ± 14 of 4 0.46Down
Larval tubule55 ± 14 of 4 0.60Down
Larval hindgut51 ± 44 of 4 0.52Down
Larval fat body124 ± 454 of 4 1.30None
Larval trachea95 ± 124 of 4 0.96None
Larval carcass57 ± 24 of 4 0.58Down
S2 cells (growing)96 ± 14 of 4 0.98None
Whole fly99 ± 64 of 4

Looking for CG8001-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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