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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8002-RA through 18771 annotations produced 1 hits



dRictor (rictor):

Annotation Number : CG8002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031006
Gbrowse : chrX:19146143-19155259 (-) // 100.0 //
Probeset : 1641023_at
Accessions : protein= NP_573371;, nucleotide= NM_133143;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031006.
TRiP has 4 RNAi stocks for FBgn0031006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 44 of 4 1.30None
Head77 54 of 4 0.70Down
Eye47 44 of 4 0.41Down
Thoracicoabdominal ganglion134 44 of 4 1.10None
Salivary gland80 74 of 4 0.69Down
Crop100 74 of 4 0.90None
Midgut64 44 of 4 0.60Down
Tubule90 54 of 4 0.80Down
Hindgut102 24 of 4 0.90None
Heart58 74 of 4 0.51Down
Fat body93 194 of 4 0.80None
Ovary381 54 of 4 3.30Up
Testis42 14 of 4 0.40Down
Male accessory glands156 114 of 4 1.30Up
Virgin spermatheca159 194 of 4 1.37None
Mated spermatheca149 54 of 4 1.28Up
Adult carcass60 44 of 4 0.50Down
Larval CNS140 164 of 4 1.21None
Larval Salivary gland110 54 of 4 0.95None
Larval midgut55 44 of 4 0.48Down
Larval tubule66 34 of 4 0.60Down
Larval hindgut68 24 of 4 0.59Down
Larval fat body37 54 of 4 0.30Down
Larval trachea60 64 of 4 0.52Down
Larval carcass46 34 of 4 0.40Down
S2 cells (growing)158 24 of 4 1.36Up
Whole fly116 104 of 4

Looking for CG8002-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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