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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8013-RB through 18771 annotations produced 1 hits



Suppressor-of-zeste-12 (Su(z)12):

Annotation Number : CG8013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020887
Gbrowse : chr3L:19911385-19916307 (-) // 100.0 //
Probeset : 1623952_a_at
Accessions : protein= NP_652059; /// NP_730465;, nucleotide= NM_143802; /// NM_168826;
Pathway : 0000790 // nuclear chromatin // non-traceable author statement /// 0005622 // intracellular // inferred from electronic
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical intera
FlyMine data for FBgn0020887.
BDGP gene expression has embryonic in situ data for Su(z)12: 4 pix of staining in 1 body parts.
BioGrid reports that CG8013 interacts with CG6502 CG7471 CG5109 CG7471 .
TRiP has 2 RNAi stocks for FBgn0020887 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020887 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 ± 84 of 4 0.70Down
Head58 ± 24 of 4 0.30Down
Eye86 ± 54 of 4 0.39Down
Thoracicoabdominal ganglion113 ± 54 of 4 0.50Down
Salivary gland169 ± 184 of 4 0.76None
Crop98 ± 34 of 4 0.40Down
Midgut70 ± 24 of 4 0.30Down
Tubule115 ± 44 of 4 0.50Down
Hindgut79 ± 24 of 4 0.40Down
Heart112 ± 24 of 4 0.51Down
Fat body106 ± 94 of 4 0.48Down
Ovary645 ± 124 of 4 2.90Up
Testis57 ± 04 of 4 0.30Down
Male accessory glands131 ± 104 of 4 0.60Down
Virgin spermatheca123 ± 104 of 4 0.55Down
Mated spermatheca134 ± 64 of 4 0.61Down
Adult carcass95 ± 44 of 4 0.40Down
Larval CNS358 ± 174 of 4 1.62Up
Larval Salivary gland282 ± 144 of 4 1.27Up
Larval midgut128 ± 94 of 4 0.58Down
Larval tubule200 ± 104 of 4 0.90None
Larval hindgut145 ± 44 of 4 0.66Down
Larval fat body141 ± 94 of 4 0.60Down
Larval trachea281 ± 134 of 4 1.27Up
Larval carcass167 ± 34 of 4 0.76Down
S2 cells (growing)285 ± 84 of 4 1.29Up
Whole fly221 ± 134 of 4

Looking for CG8013-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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