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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8019-RA through 18771 annotations produced 1 hits



anon-67Ea /// haywire (anon-67Ea /// hay):

Annotation Number : CG8019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001179
Gbrowse : chr3L:10624226-10627072 (+) // 100.0 //
Probeset : 1641306_at
Accessions : protein= NP_001137931; /// NP_524020;, nucleotide= NM_001144459; /// NM_079296;
Pathway : via spliceosome // inferred from mutant phenotype /// 0006281 // DNA repair // inferred from electronic annotation ///
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleu
FlyMine data for FBgn0001179.
Homophila reports that CG8019 is a close match (0) to human gene ERCC3;XPB (NP_000113), a gene associated with Trichothiodystrophy, 601675 (3);Xeroderma pigmentosum, group B, 610651 (3).
BioGrid reports that CG8019 interacts with CG9359 CG3319 CG33336 .
VDRC has 3 RNAi stocks for FBgn0001179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 34 of 4 1.40Up
Head59 44 of 4 0.70Down
Eye42 24 of 4 0.52Down
Thoracicoabdominal ganglion94 54 of 4 1.20None
Salivary gland51 74 of 4 0.63Down
Crop56 24 of 4 0.70Down
Midgut90 34 of 4 1.10None
Tubule60 34 of 4 0.70Down
Hindgut62 34 of 4 0.80Down
Heart33 24 of 4 0.41Down
Fat body46 34 of 4 0.57Down
Ovary134 24 of 4 1.70Up
Testis56 24 of 4 0.70Down
Male accessory glands63 34 of 4 0.80Down
Virgin spermatheca46 14 of 4 0.58Down
Mated spermatheca47 24 of 4 0.59Down
Adult carcass57 44 of 4 0.70Down
Larval CNS170 74 of 4 2.10Up
Larval Salivary gland85 74 of 4 1.06None
Larval midgut79 24 of 4 0.97None
Larval tubule102 64 of 4 1.30Up
Larval hindgut76 34 of 4 0.95None
Larval fat body78 54 of 4 1.00None
Larval trachea68 44 of 4 0.85Down
Larval carcass68 24 of 4 0.84Down
S2 cells (growing)199 34 of 4 2.45Up
Whole fly81 34 of 4

Looking for CG8019-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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