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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8027-RA through 18771 annotations produced 1 hits



(CG8027):

Annotation Number : CG8027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033392
Gbrowse : chr2R:5091912-5094626 (-) // 100.0 //
Probeset : 1637607_at
Accessions : protein= NP_610469;, nucleotide= NM_136625;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0033392.
BDGP gene expression has embryonic in situ data for CG8027: 4 pix of staining in 1 body parts.
Homophila reports that CG8027 is a close match (2e-51) to human gene GNPTA;GNPTAB (NP_077288), a gene associated with Mucolipidosis II alpha/beta, 252500 (3);Mucolipidosis III alpha/beta, 252600 (3).
VDRC has 1 RNAi stocks for FBgn0033392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 24 of 4 1.30None
Head35 ± 54 of 4 0.60None
Eye24 ± 14 of 4 0.45Down
Thoracicoabdominal ganglion100 ± 44 of 4 1.80Up
Salivary gland48 ± 23 of 4 0.87None
Crop31 ± 24 of 4 0.60Down
Midgut14 ± 33 of 4 0.30Down
Tubule26 ± 13 of 4 0.50Down
Hindgut26 ± 34 of 4 0.50Down
Heart16 ± 14 of 4 0.30Down
Fat body41 ± 34 of 4 0.74None
Ovary110 ± 34 of 4 2.00Up
Testis30 ± 14 of 4 0.60Down
Male accessory glands27 ± 31 of 4 0.50Down
Virgin spermatheca34 ± 24 of 4 0.63Down
Mated spermatheca38 ± 24 of 4 0.69None
Adult carcass28 ± 24 of 4 0.50Down
Larval CNS48 ± 54 of 4 0.88None
Larval Salivary gland21 ± 04 of 4 0.38Down
Larval midgut17 ± 12 of 4 0.32Down
Larval tubule15 ± 02 of 4 0.30Down
Larval hindgut21 ± 14 of 4 0.38Down
Larval fat body16 ± 12 of 4 0.30Down
Larval trachea22 ± 54 of 4 0.41Down
Larval carcass21 ± 14 of 4 0.39Down
S2 cells (growing)29 ± 24 of 4 0.53Down
Whole fly55 ± 64 of 4

Looking for CG8027-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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