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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8051-RA through 18771 annotations produced 1 hits



(CG8051):

Annotation Number : CG8051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031012
Gbrowse : chrX:19195353-19201957 (-) // 100.0 //
Probeset : 1636747_at
Accessions : protein= NP_573377;, nucleotide= NM_133149;
Interpro : 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from sequence or structural s
FlyMine data for FBgn0031012.
BDGP gene expression has embryonic in situ data for CG8051: 4 pix of staining in 1 body parts.
Homophila reports that CG8051 is a close match (1e-12) to human gene HHF7;MCT1;SLC16A1 (NP_003042), a gene associated with Erythrocyte lactate transporter defect, 245340 (3);Hyperinsulinemic hypoglycemia, familial, 7, 610021 (3).
BioGrid reports that CG8051 interacts with CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 0.30Down
Head46 ± 24 of 4 0.90None
Eye20 ± 24 of 4 0.39Down
Thoracicoabdominal ganglion13 ± 13 of 4 0.30Down
Salivary gland545 ± 234 of 410.60Up
Crop27 ± 04 of 4 0.50Down
Midgut377 ± 164 of 4 7.30Up
Tubule47 ± 63 of 4 0.90None
Hindgut311 ± 144 of 4 6.00Up
Heart88 ± 74 of 4 1.72Up
Fat body122 ± 84 of 4 2.38Up
Ovary3 ± 00 of 4 0.10Down
Testis46 ± 34 of 4 0.90None
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca201 ± 114 of 4 3.91Up
Mated spermatheca119 ± 114 of 4 2.32Up
Adult carcass89 ± 34 of 4 1.70Up
Larval CNS8 ± 21 of 4 0.16Down
Larval Salivary gland54 ± 54 of 4 1.06None
Larval midgut228 ± 214 of 4 4.43Up
Larval tubule16 ± 31 of 4 0.30Down
Larval hindgut161 ± 124 of 4 3.13Up
Larval fat body59 ± 54 of 4 1.20None
Larval trachea12 ± 32 of 4 0.24Down
Larval carcass56 ± 124 of 4 1.09None
S2 cells (growing)112 ± 24 of 4 2.18Up
Whole fly51 ± 44 of 4

Looking for CG8051-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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