Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8053-RA through 18771 annotations produced 1 hits



Eukaryotic initiation factor 1A (eIF-1A):

Annotation Number : CG8053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026250
Gbrowse : chr3R:14100386-14108206 (+) // 100.0 //
Probeset : 1640435_at
Accessions : protein= NP_524728; /// NP_996231;, nucleotide= NM_079989; /// NM_206509;
Pathway : engulfment // inferred from mutant phenotype /// 0007052 // mitotic spindle organization // inferred from mutant phenot
Interpro : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // non-traceable author sta
FlyMine data for FBgn0026250.
TRiP has 2 RNAi stocks for FBgn0026250 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026250 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1480 ± 264 of 4 1.00None
Head1779 ± 684 of 4 1.20None
Eye2272 ± 354 of 4 1.54Up
Thoracicoabdominal ganglion1442 ± 684 of 4 1.00None
Salivary gland2867 ± 1164 of 4 1.94Up
Crop1964 ± 374 of 4 1.30Up
Midgut1917 ± 494 of 4 1.30Up
Tubule2448 ± 184 of 4 1.70Up
Hindgut2005 ± 54 of 4 1.40Up
Heart1835 ± 754 of 4 1.24None
Fat body2462 ± 2554 of 4 1.67Up
Ovary1478 ± 414 of 4 1.00None
Testis1729 ± 454 of 4 1.20None
Male accessory glands2796 ± 254 of 4 1.90Up
Virgin spermatheca2736 ± 294 of 4 1.86Up
Mated spermatheca2513 ± 634 of 4 1.70Up
Adult carcass1754 ± 744 of 4 1.20None
Larval CNS1390 ± 504 of 4 0.94None
Larval Salivary gland3171 ± 604 of 4 2.15Up
Larval midgut1237 ± 324 of 4 0.84None
Larval tubule2301 ± 694 of 4 1.60Up
Larval hindgut1723 ± 724 of 4 1.17None
Larval fat body2299 ± 1964 of 4 1.60Up
Larval trachea2147 ± 1294 of 4 1.46Up
Larval carcass2140 ± 634 of 4 1.45Up
S2 cells (growing)1435 ± 574 of 4 0.97None
Whole fly1474 ± 1254 of 4

Looking for CG8053-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime