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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8058-RB through 18771 annotations produced 1 hits



CG8058 (Hydr1):

Annotation Number : CG8058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033382
Gbrowse : chr2R:5020013-5022964 (+) // 99.85 //
Probeset : 1630623_a_at
Accessions : protein= NP_610459; /// NP_724757;, nucleotide= NM_136615; /// NM_165653;
Interpro : 0016298 // lipase activity // not recorded
FlyMine data for FBgn0033382.
BDGP gene expression has embryonic in situ data for CG8058: 16 pix of staining in 16 body parts.
VDRC has 3 RNAi stocks for FBgn0033382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain491 ± 84 of 4 1.80Up
Head437 ± 34 of 4 1.60Up
Eye332 ± 64 of 4 1.24Up
Thoracicoabdominal ganglion649 ± 144 of 4 2.40Up
Salivary gland113 ± 104 of 4 0.42Down
Crop119 ± 74 of 4 0.40Down
Midgut433 ± 184 of 4 1.60Up
Tubule1271 ± 434 of 4 4.70Up
Hindgut169 ± 54 of 4 0.60Down
Heart251 ± 74 of 4 0.93None
Fat body385 ± 334 of 4 1.43Up
Ovary174 ± 84 of 4 0.60Down
Testis782 ± 264 of 4 2.90Up
Male accessory glands226 ± 104 of 4 0.80Down
Virgin spermatheca295 ± 124 of 4 1.10None
Mated spermatheca400 ± 244 of 4 1.49Up
Adult carcass408 ± 144 of 4 1.50Up
Larval CNS102 ± 94 of 4 0.38Down
Larval Salivary gland38 ± 14 of 4 0.14Down
Larval midgut414 ± 344 of 4 1.54Up
Larval tubule363 ± 74 of 4 1.40Up
Larval hindgut107 ± 74 of 4 0.40Down
Larval fat body87 ± 344 of 4 0.30Down
Larval trachea72 ± 54 of 4 0.27Down
Larval carcass45 ± 14 of 4 0.17Down
S2 cells (growing)126 ± 24 of 4 0.47Down
Whole fly269 ± 104 of 4

Looking for CG8058-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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