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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8060-RA through 18771 annotations produced 1 hits



(CG8060):

Annotation Number : CG8060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034113
Gbrowse : chr2R:12203816-12208222 (-) // 100.0 //
Probeset : 1628091_at
Accessions : protein= NP_611117;, nucleotide= NM_137273;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034113.
VDRC has 4 RNAi stocks for FBgn0034113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 24 of 4 1.90Up
Head27 ± 04 of 4 1.00None
Eye27 ± 24 of 4 1.03None
Thoracicoabdominal ganglion46 ± 34 of 4 1.70Up
Salivary gland47 ± 64 of 4 1.77Up
Crop35 ± 24 of 4 1.30Up
Midgut25 ± 24 of 4 0.90None
Tubule27 ± 14 of 4 1.00None
Hindgut33 ± 44 of 4 1.20None
Heart17 ± 04 of 4 0.66Down
Fat body20 ± 34 of 4 0.77Down
Ovary59 ± 14 of 4 2.20Up
Testis31 ± 24 of 4 1.20None
Male accessory glands32 ± 44 of 4 1.20None
Virgin spermatheca16 ± 04 of 4 0.62Down
Mated spermatheca23 ± 24 of 4 0.85None
Adult carcass22 ± 53 of 4 0.80None
Larval CNS66 ± 44 of 4 2.46Up
Larval Salivary gland57 ± 54 of 4 2.14Up
Larval midgut19 ± 24 of 4 0.71Down
Larval tubule35 ± 14 of 4 1.30Up
Larval hindgut27 ± 34 of 4 1.02None
Larval fat body23 ± 24 of 4 0.90None
Larval trachea34 ± 74 of 4 1.29None
Larval carcass33 ± 14 of 4 1.23None
S2 cells (growing)47 ± 24 of 4 1.77Up
Whole fly27 ± 14 of 4

Looking for CG8060-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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