FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8062-RA through 18771 annotations produced 1 hits

outsiders (out):

Annotation Number : CG8062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259834
Gbrowse : chrX:19205060-19216098 (-) // 100.0 //
Probeset : 1624181_at
Accessions : protein= NP_573378;, nucleotide= NM_133150;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0259834.
Homophila reports that CG8062 is a close match (4e-14) to human gene HHF7;MCT1;SLC16A1 (NP_003042), a gene associated with Erythrocyte lactate transporter defect, 245340 (3);Hyperinsulinemic hypoglycemia, familial, 7, 610021 (3).
VDRC has 3 RNAi stocks for FBgn0259834 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 1	4 of 4	0.20	Down
Head	89 ± 9	4 of 4	0.80	None
Eye	61 ± 3	4 of 4	0.53	Down
Thoracicoabdominal ganglion	18 ± 2	4 of 4	0.20	Down
Salivary gland	188 ± 8	4 of 4	1.64	Up
Crop	139 ± 4	4 of 4	1.20	None
Midgut	311 ± 16	4 of 4	2.70	Up
Tubule	55 ± 16	3 of 4	0.50	Down
Hindgut	349 ± 8	4 of 4	3.00	Up
Heart	63 ± 1	4 of 4	0.55	Down
Fat body	68 ± 10	4 of 4	0.60	Down
Ovary	196 ± 4	4 of 4	1.70	Up
Testis	157 ± 8	4 of 4	1.40	None
Male accessory glands	22 ± 2	0 of 4	0.20	Down
Virgin spermatheca	51 ± 2	4 of 4	0.44	Down
Mated spermatheca	43 ± 1	4 of 4	0.38	Down
Adult carcass	84 ± 7	4 of 4	0.70	None
Larval CNS	17 ± 4	4 of 4	0.15	Down
Larval Salivary gland	21 ± 1	3 of 4	0.19	Down
Larval midgut	131 ± 7	4 of 4	1.14	None
Larval tubule	40 ± 3	4 of 4	0.40	Down
Larval hindgut	187 ± 4	4 of 4	1.63	Up
Larval fat body	53 ± 14	4 of 4	0.50	Down
Larval trachea	80 ± 20	4 of 4	0.70	None
Larval carcass	38 ± 4	1 of 4	0.33	Down
S2 cells (growing)	52 ± 4	4 of 4	0.45	Down
Whole fly	115 ± 14	4 of 4

Looking for CG8062-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720