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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8066-RA through 18771 annotations produced 1 hits



(CG8066):

Annotation Number : CG8066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038243
Gbrowse : chr3R:10393331-10394532 (-) // 100.0 //
Probeset : 1626908_at
Accessions : protein= NP_650374;, nucleotide= NM_142117;
Interpro : 0004869 // cysteine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004869
FlyMine data for FBgn0038243.
BDGP gene expression has embryonic in situ data for CG8066: 73 pix of staining in 16 body parts.
VDRC has 4 RNAi stocks for FBgn0038243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 4 1.30Up
Head48 ± 44 of 4 1.70Up
Eye21 ± 04 of 4 0.77Down
Thoracicoabdominal ganglion69 ± 34 of 4 2.50Up
Salivary gland28 ± 44 of 4 1.00None
Crop107 ± 34 of 4 3.80Up
Midgut64 ± 24 of 4 2.30Up
Tubule87 ± 74 of 4 3.10Up
Hindgut156 ± 44 of 4 5.60Up
Heart337 ± 334 of 412.00Up
Fat body49 ± 74 of 4 1.77Up
Ovary18 ± 14 of 4 0.70Down
Testis11 ± 04 of 4 0.40Down
Male accessory glands28 ± 44 of 4 1.00None
Virgin spermatheca40 ± 24 of 4 1.45Up
Mated spermatheca50 ± 14 of 4 1.79Up
Adult carcass46 ± 24 of 4 1.70Up
Larval CNS49 ± 34 of 4 1.75Up
Larval Salivary gland58 ± 74 of 4 2.08Up
Larval midgut94 ± 24 of 4 3.37Up
Larval tubule122 ± 34 of 4 4.30Up
Larval hindgut127 ± 34 of 4 4.54Up
Larval fat body67 ± 74 of 4 2.40Up
Larval trachea302 ± 294 of 410.77Up
Larval carcass71 ± 44 of 4 2.53Up
S2 cells (growing)100 ± 34 of 4 3.59Up
Whole fly28 ± 14 of 4

Looking for CG8066-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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