Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8079-RB through 18771 annotations produced 1 hits



(CG8079):

Annotation Number : CG8079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034002
Gbrowse : chr2R:11105885-11111329 (+) // 100.0 //
Probeset : 1630835_a_at
Accessions : protein= NP_611023; /// NP_725443;, nucleotide= NM_137179; /// NM_166082;
Pathway : via spliceosome // inferred by curator"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0071011 // precatalytic spliceosome // inferred from
FlyMine data for FBgn0034002.
VDRC has 3 RNAi stocks for FBgn0034002 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 44 of 4 1.70Up
Head30 24 of 4 0.60Down
Eye40 14 of 4 0.82None
Thoracicoabdominal ganglion76 64 of 4 1.50Up
Salivary gland31 62 of 4 0.63None
Crop36 34 of 4 0.70None
Midgut23 14 of 4 0.50Down
Tubule495 474 of 410.00Up
Hindgut45 14 of 4 0.90None
Heart36 14 of 4 0.74None
Fat body46 84 of 4 0.94None
Ovary92 54 of 4 1.90Up
Testis19 24 of 4 0.40Down
Male accessory glands31 34 of 4 0.60Down
Virgin spermatheca85 64 of 4 1.72Up
Mated spermatheca83 54 of 4 1.69Up
Adult carcass43 04 of 4 0.90None
Larval CNS110 104 of 4 2.22Up
Larval Salivary gland44 34 of 4 0.89None
Larval midgut14 23 of 4 0.28Down
Larval tubule49 24 of 4 1.00None
Larval hindgut30 14 of 4 0.61Down
Larval fat body60 104 of 4 1.20None
Larval trachea51 104 of 4 1.05None
Larval carcass25 14 of 4 0.52Down
S2 cells (growing)54 24 of 4 1.11None
Whole fly49 64 of 4

Looking for CG8079-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime