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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8092-RB through 18771 annotations produced 2 hits



Relative-of-WOC (row):

Annotation Number : CG8092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033998
Gbrowse : chr2R:11098744-11101137 (-) // 100.0 //
Probeset : 1623401_a_at
Accessions : protein= NP_611019; /// NP_725441;, nucleotide= NM_137175; /// NM_166081;
Pathway : DNA-dependent // inferred from mutant phenotype"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct a
FlyMine data for FBgn0033998.
BDGP gene expression has embryonic in situ data for CG8092: 19 pix of staining in 27 body parts.
BioGrid reports that CG8092 interacts with CG8886 CG8159 CG9323 CG9392 CG9665 .
TRiP has 1 RNAi stocks for FBgn0033998 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.50Down
Head22 ± 24 of 4 0.40Down
Eye15 ± 34 of 4 0.29Down
Thoracicoabdominal ganglion11 ± 30 of 4 0.20Down
Salivary gland41 ± 12 of 4 0.78Down
Crop25 ± 24 of 4 0.50Down
Midgut24 ± 04 of 4 0.50Down
Tubule26 ± 23 of 4 0.50Down
Hindgut23 ± 24 of 4 0.50Down
Heart14 ± 14 of 4 0.28Down
Fat body19 ± 14 of 4 0.38Down
Ovary113 ± 24 of 4 2.10Up
Testis28 ± 44 of 4 0.50Down
Male accessory glands52 ± 34 of 4 1.00None
Virgin spermatheca14 ± 23 of 4 0.27Down
Mated spermatheca20 ± 24 of 4 0.38Down
Adult carcass17 ± 21 of 4 0.30Down
Larval CNS41 ± 14 of 4 0.78Down
Larval Salivary gland92 ± 14 of 4 1.74Up
Larval midgut22 ± 34 of 4 0.43Down
Larval tubule28 ± 34 of 4 0.50Down
Larval hindgut28 ± 14 of 4 0.55Down
Larval fat body26 ± 54 of 4 0.50Down
Larval trachea39 ± 54 of 4 0.74Down
Larval carcass31 ± 34 of 4 0.60Down
S2 cells (growing)162 ± 134 of 4 3.07Up
Whole fly53 ± 24 of 4



Relative-of-WOC (row):

Annotation Number : CG8092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033998
Gbrowse : chr2R:11098744-11101137 (-) // 100.0 //
Probeset : 1628825_at
Accessions : protein= NP_611019; /// NP_725441;, nucleotide= NM_137175; /// NM_166081;
Pathway : DNA-dependent // inferred from mutant phenotype"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0043234 // protein complex // inferred from direct a
FlyMine data for FBgn0033998.
BDGP gene expression has embryonic in situ data for CG8092: 19 pix of staining in 27 body parts.
BioGrid reports that CG8092 interacts with CG8886 CG8159 CG9323 CG9392 CG9665 .
TRiP has 1 RNAi stocks for FBgn0033998 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.20Down
Head23 ± 24 of 4 0.40Down
Eye23 ± 04 of 4 0.40Down
Thoracicoabdominal ganglion13 ± 04 of 4 0.20Down
Salivary gland48 ± 44 of 4 0.80None
Crop30 ± 44 of 4 0.50Down
Midgut32 ± 24 of 4 0.50Down
Tubule30 ± 14 of 4 0.50Down
Hindgut25 ± 24 of 4 0.40Down
Heart20 ± 14 of 4 0.35Down
Fat body41 ± 84 of 4 0.69Down
Ovary160 ± 44 of 4 2.70Up
Testis37 ± 24 of 4 0.60Down
Male accessory glands67 ± 14 of 4 1.10Up
Virgin spermatheca58 ± 44 of 4 0.97None
Mated spermatheca67 ± 34 of 4 1.13None
Adult carcass31 ± 34 of 4 0.50Down
Larval CNS70 ± 54 of 4 1.17Up
Larval Salivary gland134 ± 44 of 4 2.22Up
Larval midgut37 ± 14 of 4 0.61Down
Larval tubule33 ± 34 of 4 0.60Down
Larval hindgut51 ± 34 of 4 0.86None
Larval fat body27 ± 34 of 4 0.50Down
Larval trachea66 ± 84 of 4 1.10None
Larval carcass54 ± 24 of 4 0.90None
S2 cells (growing)98 ± 24 of 4 1.62Up
Whole fly60 ± 14 of 4

Looking for CG8092-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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