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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8094-RA through 18771 annotations produced 1 hits



Hexokinase (Hex-C):

Annotation Number : CG8094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001187
Gbrowse : chr2R:11106339-11107917 (-) // 100.0 //
Probeset : 1630147_at
Accessions : protein= NP_524674;, nucleotide= NM_079935;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004396 // hexokinase activity // inferred fro
FlyMine data for FBgn0001187.
BDGP gene expression has embryonic in situ data for Hex-C: 2 pix of staining in 1 body parts.
Homophila reports that CG8094 is a close match (3e-97) to human gene HK1 (NP_277035), a gene associated with Hemolytic anemia due to hexokinase deficiency (3).
VDRC has 2 RNAi stocks for FBgn0001187 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 01 of 4 0.10Down
Head566 ± 264 of 4 1.80Up
Eye160 ± 394 of 4 0.50Down
Thoracicoabdominal ganglion97 ± 54 of 4 0.30Down
Salivary gland11 ± 40 of 4 0.04Down
Crop15 ± 30 of 4 0.00Down
Midgut95 ± 34 of 4 0.30Down
Tubule5517 ± 4544 of 417.30Up
Hindgut219 ± 114 of 4 0.70None
Heart1362 ± 1774 of 4 4.27Up
Fat body2334 ± 1614 of 4 7.32Up
Ovary2 ± 10 of 4 0.00Down
Testis11 ± 10 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3369 ± 664 of 410.56Up
Mated spermatheca2185 ± 2274 of 4 6.85Up
Adult carcass1491 ± 694 of 4 4.70Up
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland6 ± 20 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.01Down
Larval tubule15 ± 20 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.02Down
Larval fat body11 ± 30 of 4 0.00Down
Larval trachea3 ± 30 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly319 ± 474 of 4

Looking for CG8094-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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