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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8111-RA through 18771 annotations produced 1 hits



(CG8111):

Annotation Number : CG8111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035825
Gbrowse : chr3L:7906759-7908216 (-) // 100.0 //
Probeset : 1627449_at
Accessions : protein= NP_648162;, nucleotide= NM_139905;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035825.
Homophila reports that CG8111 is a close match (6e-48) to human gene ARVC5;ARVD5;TMEM43 (NP_077310), a gene associated with Arrhythmogenic right ventricular dysplasia, familial, 5, 604400 (3).
VDRC has 2 RNAi stocks for FBgn0035825 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 ± 24 of 4 1.20None
Head81 ± 74 of 4 1.20None
Eye132 ± 74 of 4 1.96Up
Thoracicoabdominal ganglion82 ± 24 of 4 1.20None
Salivary gland155 ± 214 of 4 2.30Up
Crop124 ± 54 of 4 1.80Up
Midgut83 ± 73 of 4 1.20None
Tubule243 ± 84 of 4 3.60Up
Hindgut99 ± 62 of 4 1.50Up
Heart79 ± 44 of 4 1.17None
Fat body68 ± 190 of 4 1.02None
Ovary118 ± 44 of 4 1.70Up
Testis85 ± 34 of 4 1.30Up
Male accessory glands158 ± 44 of 4 2.30Up
Virgin spermatheca112 ± 83 of 4 1.65Up
Mated spermatheca147 ± 44 of 4 2.17Up
Adult carcass72 ± 80 of 4 1.10None
Larval CNS113 ± 84 of 4 1.68Up
Larval Salivary gland153 ± 94 of 4 2.27Up
Larval midgut79 ± 13 of 4 1.17None
Larval tubule98 ± 44 of 4 1.50Up
Larval hindgut105 ± 54 of 4 1.55Up
Larval fat body99 ± 54 of 4 1.50Up
Larval trachea154 ± 94 of 4 2.28Up
Larval carcass157 ± 53 of 4 2.32Up
S2 cells (growing)215 ± 54 of 4 3.19Up
Whole fly67 ± 53 of 4

Looking for CG8111-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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