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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8121-RA through 18771 annotations produced 1 hits



(CG8121):

Annotation Number : CG8121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037680
Gbrowse : chr3R:5160896-5162987 (+) // 100.0 //
Probeset : 1624415_s_at
Accessions : protein= NP_649883; /// NP_731333; /// NP_731334;, nucleotide= NM_141626; /// NM_169266; /// NM_169267;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037680.
VDRC has 3 RNAi stocks for FBgn0037680 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 44 of 4 0.70Down
Head180 ± 54 of 4 0.90None
Eye229 ± 54 of 4 1.14Up
Thoracicoabdominal ganglion97 ± 24 of 4 0.50Down
Salivary gland301 ± 114 of 4 1.50Up
Crop527 ± 224 of 4 2.60Up
Midgut17 ± 10 of 4 0.10Down
Tubule23 ± 33 of 4 0.10Down
Hindgut305 ± 134 of 4 1.50Up
Heart61 ± 34 of 4 0.31Down
Fat body43 ± 44 of 4 0.21Down
Ovary438 ± 124 of 4 2.20Up
Testis58 ± 34 of 4 0.30Down
Male accessory glands527 ± 194 of 4 2.60Up
Virgin spermatheca241 ± 174 of 4 1.21None
Mated spermatheca400 ± 544 of 4 2.00Up
Adult carcass118 ± 104 of 4 0.60Down
Larval CNS126 ± 124 of 4 0.63Down
Larval Salivary gland240 ± 154 of 4 1.20None
Larval midgut21 ± 34 of 4 0.11Down
Larval tubule13 ± 23 of 4 0.10Down
Larval hindgut270 ± 54 of 4 1.35Up
Larval fat body116 ± 114 of 4 0.60Down
Larval trachea739 ± 564 of 4 3.69Up
Larval carcass251 ± 194 of 4 1.25None
S2 cells (growing)238 ± 44 of 4 1.19Up
Whole fly200 ± 84 of 4

Looking for CG8121-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime