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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8127-RB through 18771 annotations produced 1 hits



chr3L:17946457-18052698 (-) // 100.0 // (Ecdysone-induced protein 75B):

Annotation Number : CG8127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623164_a_at
Accessions : protein= , nucleotide= NP_524133; /// NP_730321; /// NP_730322; /// NP_730323;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG8127 is a close match (8e-11) to human gene HNF4A;MODY1;TCF14 (NP_849180), a gene associated with MODY, type I, 125850 (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
BioGrid reports that CG8127 interacts with CG3340 CG3340 CG18412 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain293 ± 144 of 4 4.10Up
Head82 ± 81 of 4 1.10None
Eye73 ± 93 of 4 1.03None
Thoracicoabdominal ganglion217 ± 64 of 4 3.00Up
Salivary gland92 ± 160 of 4 1.28None
Crop113 ± 90 of 4 1.60Up
Midgut95 ± 50 of 4 1.30Up
Tubule56 ± 50 of 4 0.80Down
Hindgut82 ± 40 of 4 1.10None
Heart92 ± 54 of 4 1.28Up
Fat body172 ± 410 of 4 2.39Up
Ovary61 ± 41 of 4 0.90None
Testis24 ± 30 of 4 0.30Down
Male accessory glands82 ± 60 of 4 1.10None
Virgin spermatheca55 ± 20 of 4 0.78Down
Mated spermatheca49 ± 20 of 4 0.68Down
Adult carcass161 ± 292 of 4 2.20None
Larval CNS188 ± 134 of 4 2.61Up
Larval Salivary gland129 ± 110 of 4 1.80Up
Larval midgut130 ± 110 of 4 1.80Up
Larval tubule234 ± 154 of 4 3.30Up
Larval hindgut108 ± 100 of 4 1.51Up
Larval fat body277 ± 134 of 4 3.90Up
Larval trachea134 ± 44 of 4 1.86Up
Larval carcass184 ± 322 of 4 2.55Up
S2 cells (growing)196 ± 104 of 4 2.73Up
Whole fly72 ± 20 of 4

Looking for CG8127-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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