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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8132-RA through 18771 annotations produced 1 hits



(CG8132):

Annotation Number : CG8132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037687
Gbrowse : chr3R:5227241-5228340 (+) // 100.0 //
Probeset : 1641318_at
Accessions : protein= NP_649888;, nucleotide= NM_141631;
Interpro : "0000257 // nitrilase activity // inferred from sequence or structural similarity /// 0000257 // nitrilase activity // i
FlyMine data for FBgn0037687.
BDGP gene expression has embryonic in situ data for CG8132: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 44 of 4 0.60Down
Head236 ± 64 of 4 1.20Up
Eye168 ± 154 of 4 0.86None
Thoracicoabdominal ganglion76 ± 34 of 4 0.40Down
Salivary gland195 ± 104 of 4 1.00None
Crop159 ± 54 of 4 0.80Down
Midgut476 ± 194 of 4 2.40Up
Tubule1126 ± 1254 of 4 5.80Up
Hindgut296 ± 44 of 4 1.50Up
Heart435 ± 154 of 4 2.23Up
Fat body487 ± 474 of 4 2.50Up
Ovary185 ± 54 of 4 1.00None
Testis22 ± 04 of 4 0.10Down
Male accessory glands196 ± 114 of 4 1.00None
Virgin spermatheca404 ± 224 of 4 2.07Up
Mated spermatheca426 ± 144 of 4 2.19Up
Adult carcass325 ± 34 of 4 1.70Up
Larval CNS157 ± 154 of 4 0.80Down
Larval Salivary gland160 ± 34 of 4 0.82Down
Larval midgut170 ± 104 of 4 0.87None
Larval tubule369 ± 254 of 4 1.90Up
Larval hindgut179 ± 44 of 4 0.92None
Larval fat body432 ± 524 of 4 2.20Up
Larval trachea210 ± 134 of 4 1.08None
Larval carcass131 ± 64 of 4 0.67Down
S2 cells (growing)189 ± 54 of 4 0.97None
Whole fly195 ± 94 of 4

Looking for CG8132-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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