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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8136-RA through 18771 annotations produced 1 hits



(CG8136):

Annotation Number : CG8136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037616
Gbrowse : chr3R:4547092-4548776 (+) // 100.0 //
Probeset : 1630204_a_at
Accessions : protein= NP_001163555; /// NP_649820; /// NP_731272; /// NP_996183;, nucleotide= NM_001170084; /// NM_141563; /// NM_169237; /// NM_206461;
FlyMine data for FBgn0037616.
BDGP gene expression has embryonic in situ data for CG8136: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037616 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037616 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.10Down
Head13 ± 12 of 4 0.10Down
Eye7 ± 21 of 4 0.05Down
Thoracicoabdominal ganglion16 ± 14 of 4 0.10Down
Salivary gland37 ± 82 of 4 0.22Down
Crop18 ± 24 of 4 0.10Down
Midgut21 ± 12 of 4 0.10Down
Tubule18 ± 02 of 4 0.10Down
Hindgut18 ± 12 of 4 0.10Down
Heart12 ± 12 of 4 0.07Down
Fat body29 ± 63 of 4 0.17Down
Ovary9 ± 02 of 4 0.10Down
Testis1494 ± 764 of 4 8.70Up
Male accessory glands9 ± 20 of 4 0.10Down
Virgin spermatheca20 ± 22 of 4 0.12Down
Mated spermatheca17 ± 21 of 4 0.10Down
Adult carcass33 ± 33 of 4 0.20Down
Larval CNS8 ± 32 of 4 0.05Down
Larval Salivary gland13 ± 11 of 4 0.08Down
Larval midgut19 ± 10 of 4 0.11Down
Larval tubule16 ± 00 of 4 0.10Down
Larval hindgut15 ± 41 of 4 0.09Down
Larval fat body109 ± 434 of 4 0.60None
Larval trachea12 ± 82 of 4 0.07Down
Larval carcass21 ± 13 of 4 0.13Down
S2 cells (growing)15 ± 13 of 4 0.09Down
Whole fly171 ± 74 of 4

Looking for CG8136-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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