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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8147-RA through 18771 annotations produced 1 hits



(CG8147):

Annotation Number : CG8147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043791
Gbrowse : chr3R:5320524-5322445 (+) // 99.63 //
Probeset : 1633540_at
Accessions : protein= NP_001034040; /// NP_649897;, nucleotide= NM_001038951; /// NM_141640;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0043791.
Homophila reports that CG8147 is a close match (1e-94) to human gene (NP_001623), a gene associated with .
BioGrid reports that CG8147 interacts with CG9163 .
VDRC has 2 RNAi stocks for FBgn0043791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head144 ± 504 of 4 6.80None
Eye126 ± 314 of 4 5.94Up
Thoracicoabdominal ganglion5 ± 21 of 4 0.30None
Salivary gland6 ± 30 of 4 0.31None
Crop6 ± 00 of 4 0.30None
Midgut7 ± 10 of 4 0.40None
Tubule166 ± 903 of 4 7.80None
Hindgut3 ± 10 of 4 0.20Down
Heart65 ± 174 of 4 3.09None
Fat body65 ± 414 of 4 3.06None
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands8 ± 30 of 4 0.40None
Virgin spermatheca78 ± 344 of 4 3.68None
Mated spermatheca38 ± 54 of 4 1.80None
Adult carcass78 ± 104 of 4 3.70Up
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland2 ± 00 of 4 0.12Down
Larval midgut5 ± 10 of 4 0.26None
Larval tubule7 ± 10 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.04Down
Larval fat body6 ± 20 of 4 0.30None
Larval trachea2 ± 21 of 4 0.12Down
Larval carcass3 ± 10 of 4 0.17Down
S2 cells (growing)3 ± 00 of 4 0.16Down
Whole fly21 ± 54 of 4

Looking for CG8147-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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