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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8149-RA through 18771 annotations produced 1 hits



(CG8149):

Annotation Number : CG8149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037700
Gbrowse : chr3R:5330381-5331588 (+) // 100.0 //
Probeset : 1626076_at
Accessions : protein= NP_649898;, nucleotide= NM_141641;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0037700.
BDGP gene expression has embryonic in situ data for CG8149: 17 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0037700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 ± 34 of 4 0.70Down
Head140 ± 64 of 4 0.60Down
Eye156 ± 94 of 4 0.66Down
Thoracicoabdominal ganglion171 ± 74 of 4 0.70Down
Salivary gland212 ± 104 of 4 0.89None
Crop224 ± 34 of 4 0.90None
Midgut162 ± 74 of 4 0.70Down
Tubule148 ± 54 of 4 0.60Down
Hindgut156 ± 24 of 4 0.70Down
Heart147 ± 44 of 4 0.62Down
Fat body110 ± 34 of 4 0.46Down
Ovary366 ± 14 of 4 1.50Up
Testis119 ± 24 of 4 0.50Down
Male accessory glands298 ± 54 of 4 1.20Up
Virgin spermatheca165 ± 74 of 4 0.69Down
Mated spermatheca213 ± 124 of 4 0.89None
Adult carcass111 ± 104 of 4 0.50Down
Larval CNS383 ± 234 of 4 1.61Up
Larval Salivary gland240 ± 44 of 4 1.01None
Larval midgut123 ± 34 of 4 0.52Down
Larval tubule110 ± 64 of 4 0.50Down
Larval hindgut155 ± 44 of 4 0.65Down
Larval fat body141 ± 84 of 4 0.60Down
Larval trachea314 ± 384 of 4 1.32Up
Larval carcass179 ± 84 of 4 0.75Down
S2 cells (growing)237 ± 44 of 4 0.99None
Whole fly238 ± 154 of 4

Looking for CG8149-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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