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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8161-RA through 18771 annotations produced 1 hits



Rlb1 (Rlb1):

Annotation Number : CG8161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014022
Gbrowse : chr3R:5339067-5340550 (+) // 100.0 //
Probeset : 1638480_at
Accessions : protein= NP_477099;, nucleotide= NM_057751;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0014022.
BDGP gene expression has embryonic in situ data for Rlb1: 8 pix of staining in 3 body parts.
BioGrid reports that CG8161 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0014022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 24 of 4 1.00None
Head41 ± 24 of 4 0.70Down
Eye37 ± 44 of 4 0.60Down
Thoracicoabdominal ganglion58 ± 64 of 4 0.90None
Salivary gland39 ± 64 of 4 0.63Down
Crop47 ± 04 of 4 0.80None
Midgut30 ± 24 of 4 0.50Down
Tubule30 ± 24 of 4 0.50Down
Hindgut29 ± 24 of 4 0.50Down
Heart23 ± 14 of 4 0.38Down
Fat body33 ± 64 of 4 0.54Down
Ovary146 ± 54 of 4 2.30Up
Testis17 ± 04 of 4 0.30Down
Male accessory glands65 ± 54 of 4 1.10None
Virgin spermatheca23 ± 34 of 4 0.38Down
Mated spermatheca28 ± 54 of 4 0.46Down
Adult carcass37 ± 23 of 4 0.60Down
Larval CNS99 ± 94 of 4 1.59Up
Larval Salivary gland43 ± 44 of 4 0.70Down
Larval midgut20 ± 14 of 4 0.33Down
Larval tubule30 ± 24 of 4 0.50Down
Larval hindgut30 ± 34 of 4 0.48Down
Larval fat body26 ± 24 of 4 0.40Down
Larval trachea37 ± 14 of 4 0.60Down
Larval carcass32 ± 44 of 4 0.53Down
S2 cells (growing)58 ± 24 of 4 0.94None
Whole fly62 ± 54 of 4

Looking for CG8161-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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