FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8166-RA through 18771 annotations produced 2 hits

unc-5-like (unc-5):

Annotation Number : HDC06551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034013
Gbrowse : chr2R:11238013-11238257 (+) // 100.0 //
Probeset : 1638390_at
Accessions : protein= NP_611033;, nucleotide= NM_137189;
Interpro : 0005042 // netrin receptor activity // inferred from sequence or structural similarity /// 0005043 // repulsive netrin r
FlyMine data for FBgn0034013.
TRiP has 1 RNAi stocks for FBgn0034013 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034013 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.70	None
Head	1 ± 0	0 of 4	0.30	None
Eye	3 ± 2	0 of 4	0.57	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.20	None
Salivary gland	15 ± 10	0 of 4	2.24	None
Crop	2 ± 0	0 of 4	0.30	None
Midgut	3 ± 0	0 of 4	0.50	None
Tubule	7 ± 0	0 of 4	1.00	None
Hindgut	5 ± 1	0 of 4	0.80	None
Heart	1 ± 0	0 of 4	0.20	None
Fat body	14 ± 8	0 of 4	2.11	None
Ovary	4 ± 1	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.20	None
Male accessory glands	2 ± 0	0 of 4	0.40	None
Virgin spermatheca	2 ± 0	0 of 4	0.40	None
Mated spermatheca	2 ± 0	0 of 4	0.31	None
Adult carcass	5 ± 1	0 of 4	0.70	None
Larval CNS	10 ± 5	0 of 4	1.53	None
Larval Salivary gland	9 ± 2	0 of 4	1.34	None
Larval midgut	3 ± 0	0 of 4	0.51	None
Larval tubule	7 ± 1	0 of 4	1.20	None
Larval hindgut	5 ± 2	0 of 4	0.86	None
Larval fat body	5 ± 2	0 of 4	0.80	None
Larval trachea	4 ± 2	0 of 4	0.66	None
Larval carcass	11 ± 2	0 of 4	1.67	None
S2 cells (growing)	6 ± 2	0 of 4	0.93	None
Whole fly	6 ± 2	0 of 4

unc-5-like (unc-5):

Annotation Number : CG8166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034013
Gbrowse : chr2R:11237658-11255807 (+) // 100.0 //
Probeset : 1632550_at
Accessions : protein= NP_611033;, nucleotide= NM_137189;
Interpro : 0005042 // netrin receptor activity // inferred from sequence or structural similarity /// 0005043 // repulsive netrin r
FlyMine data for FBgn0034013.
Homophila reports that CG8166 is a close match (1e-12) to human gene ROBO3;RBIG1;RIG1;HGPPS (NP_071765), a gene associated with Gaze palsy, horizontal, with progressive scoliosis, 607313 (3).
BioGrid reports that CG8166 interacts with CG8581 CG10521 .
TRiP has 1 RNAi stocks for FBgn0034013 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034013 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	320 ± 10	4 of 4	13.80	Up
Head	93 ± 7	4 of 4	4.00	Up
Eye	43 ± 5	4 of 4	1.90	Up
Thoracicoabdominal ganglion	244 ± 10	4 of 4	10.60	Up
Salivary gland	10 ± 3	0 of 4	0.46	Down
Crop	9 ± 1	0 of 4	0.40	Down
Midgut	4 ± 0	0 of 4	0.20	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	12 ± 0	4 of 4	0.50	Down
Heart	17 ± 0	4 of 4	0.75	None
Fat body	27 ± 9	4 of 4	1.19	None
Ovary	8 ± 1	3 of 4	0.40	Down
Testis	17 ± 1	4 of 4	0.80	None
Male accessory glands	10 ± 4	2 of 4	0.40	None
Virgin spermatheca	17 ± 2	4 of 4	0.75	None
Mated spermatheca	24 ± 3	4 of 4	1.04	None
Adult carcass	23 ± 2	4 of 4	1.00	None
Larval CNS	737 ± 82	4 of 4	31.85	Up
Larval Salivary gland	5 ± 0	0 of 4	0.22	Down
Larval midgut	9 ± 0	2 of 4	0.39	Down
Larval tubule	5 ± 1	1 of 4	0.30	Down
Larval hindgut	11 ± 0	4 of 4	0.49	Down
Larval fat body	14 ± 1	4 of 4	0.60	Down
Larval trachea	176 ± 48	4 of 4	7.64	Up
Larval carcass	48 ± 2	4 of 4	2.08	Up
S2 cells (growing)	263 ± 14	4 of 4	11.37	Up
Whole fly	23 ± 2	4 of 4

Looking for CG8166-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720