FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8169-RA through 18771 annotations produced 1 hits

Pms2 (Pms2):

Annotation Number : CG8169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011660
Gbrowse : chr2R:11255576-11259021 (-) // 100.0 //
Probeset : 1641382_at
Accessions : protein= NP_477023;, nucleotide= NM_057675;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005524 // ATP binding // inferred from electronic annotation /// 0030983 // mismatched DNA binding // inferred from ele
FlyMine data for FBgn0011660.
Homophila reports that CG8169 is a close match (7e-16) to human gene HNPCC7;MLH3 (NP_055196), a gene associated with Colon cancer, hereditary nonpolypopsis, type 7 (3);Colorectal cancer, somatic, 114500 (3).
VDRC has 2 RNAi stocks for FBgn0011660 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 1	4 of 4	0.60	Down
Head	20 ± 0	3 of 4	0.30	Down
Eye	18 ± 1	2 of 4	0.25	Down
Thoracicoabdominal ganglion	57 ± 4	4 of 4	0.80	Down
Salivary gland	9 ± 4	0 of 4	0.13	Down
Crop	15 ± 4	0 of 4	0.20	Down
Midgut	16 ± 2	0 of 4	0.20	Down
Tubule	13 ± 1	0 of 4	0.20	Down
Hindgut	13 ± 2	1 of 4	0.20	Down
Heart	6 ± 1	0 of 4	0.09	Down
Fat body	6 ± 4	0 of 4	0.09	Down
Ovary	163 ± 4	4 of 4	2.20	Up
Testis	125 ± 2	4 of 4	1.70	Up
Male accessory glands	28 ± 3	1 of 4	0.40	Down
Virgin spermatheca	8 ± 0	0 of 4	0.12	Down
Mated spermatheca	12 ± 2	0 of 4	0.17	Down
Adult carcass	17 ± 1	0 of 4	0.20	Down
Larval CNS	85 ± 6	4 of 4	1.18	Up
Larval Salivary gland	24 ± 1	1 of 4	0.33	Down
Larval midgut	16 ± 2	0 of 4	0.23	Down
Larval tubule	28 ± 1	3 of 4	0.40	Down
Larval hindgut	23 ± 1	3 of 4	0.32	Down
Larval fat body	41 ± 14	3 of 4	0.60	None
Larval trachea	44 ± 7	4 of 4	0.62	Down
Larval carcass	34 ± 1	0 of 4	0.47	Down
S2 cells (growing)	113 ± 1	4 of 4	1.57	Up
Whole fly	72 ± 2	4 of 4

Looking for CG8169-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720