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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8170-RA through 18771 annotations produced 1 hits



(CG8170):

Annotation Number : CG8170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033365
Gbrowse : chr2R:4906529-4918546 (-) // 100.0 //
Probeset : 1625130_at
Accessions : protein= NP_001036533; /// NP_610441;, nucleotide= NM_001043068; /// NM_136597;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033365.
BDGP gene expression has embryonic in situ data for CG8170: 4 pix of staining in 1 body parts.
Homophila reports that CG8170 is a close match (1e-12) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 1 RNAi stocks for FBgn0033365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.20Down
Head13 ± 14 of 4 0.60Down
Eye46 ± 34 of 4 2.12Up
Thoracicoabdominal ganglion6 ± 11 of 4 0.30Down
Salivary gland8 ± 20 of 4 0.38Down
Crop8 ± 04 of 4 0.40Down
Midgut8 ± 12 of 4 0.40Down
Tubule8 ± 01 of 4 0.40Down
Hindgut593 ± 234 of 427.30Up
Heart4 ± 01 of 4 0.23Down
Fat body7 ± 12 of 4 0.34Down
Ovary4 ± 01 of 4 0.20Down
Testis33 ± 34 of 4 1.60Up
Male accessory glands8 ± 00 of 4 0.40Down
Virgin spermatheca7 ± 22 of 4 0.34Down
Mated spermatheca4 ± 10 of 4 0.20Down
Adult carcass11 ± 12 of 4 0.50Down
Larval CNS6 ± 03 of 4 0.28Down
Larval Salivary gland7 ± 20 of 4 0.33Down
Larval midgut11 ± 14 of 4 0.52Down
Larval tubule5 ± 11 of 4 0.30Down
Larval hindgut162 ± 184 of 4 7.46Up
Larval fat body8 ± 21 of 4 0.40Down
Larval trachea26 ± 84 of 4 1.20None
Larval carcass23 ± 24 of 4 1.07None
S2 cells (growing)6 ± 02 of 4 0.32Down
Whole fly21 ± 14 of 4

Looking for CG8170-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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