Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8171-RA through 18771 annotations produced 1 hits



Double-parked (dup):

Annotation Number : CG8171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000996
Gbrowse : chr2R:11264116-11268465 (-) // 100.0 //
Probeset : 1624994_at
Accessions : protein= NP_524878;, nucleotide= NM_080139;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005657 // replication fork // inferred from direct assay /// 00056
Interpro : 0003677 // DNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical intera
FlyMine data for FBgn0000996.
BioGrid reports that CG8171 interacts with CG8603 CG7838 CG3183 CG3183 CG4252 CG11538 .
TRiP has 1 RNAi stocks for FBgn0000996 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 0.00Down
Head21 ± 14 of 4 0.00Down
Eye11 ± 14 of 4 0.03Down
Thoracicoabdominal ganglion18 ± 14 of 4 0.00Down
Salivary gland39 ± 73 of 4 0.09Down
Crop25 ± 34 of 4 0.10Down
Midgut36 ± 24 of 4 0.10Down
Tubule28 ± 34 of 4 0.10Down
Hindgut17 ± 14 of 4 0.00Down
Heart12 ± 14 of 4 0.03Down
Fat body25 ± 64 of 4 0.06Down
Ovary1105 ± 294 of 4 2.40Up
Testis40 ± 14 of 4 0.10Down
Male accessory glands26 ± 24 of 4 0.10Down
Virgin spermatheca15 ± 33 of 4 0.03Down
Mated spermatheca16 ± 24 of 4 0.04Down
Adult carcass39 ± 94 of 4 0.10Down
Larval CNS376 ± 424 of 4 0.82None
Larval Salivary gland200 ± 144 of 4 0.44Down
Larval midgut40 ± 44 of 4 0.09Down
Larval tubule26 ± 14 of 4 0.10Down
Larval hindgut56 ± 54 of 4 0.12Down
Larval fat body27 ± 34 of 4 0.10Down
Larval trachea85 ± 104 of 4 0.19Down
Larval carcass100 ± 104 of 4 0.22Down
S2 cells (growing)231 ± 54 of 4 0.51Down
Whole fly456 ± 344 of 4

Looking for CG8171-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime