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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8172-RA through 18771 annotations produced 1 hits



(CG8172):

Annotation Number : CG8172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033362
Gbrowse : chr2R:4895075-4901013 (-) // 100.0 //
Probeset : 1637354_at
Accessions : protein= NP_001097235; /// NP_001097236; /// NP_610438;, nucleotide= NM_001103765; /// NM_001103766; /// NM_136594;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033362.
Homophila reports that CG8172 is a close match (4e-11) to human gene BF;CFB;GBG (NP_001701), a gene associated with {Macular degeneration, age-related, reduced risk of}, 603075 (3).
VDRC has 1 RNAi stocks for FBgn0033362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20None
Head2 ± 00 of 4 1.30None
Eye3 ± 00 of 4 2.00None
Thoracicoabdominal ganglion2 ± 00 of 4 1.40None
Salivary gland16 ± 50 of 4 9.37None
Crop2 ± 10 of 4 1.60None
Midgut3 ± 10 of 4 1.80None
Tubule1 ± 00 of 4 1.00None
Hindgut5 ± 10 of 4 2.80None
Heart2 ± 10 of 4 1.41None
Fat body5 ± 20 of 4 2.94None
Ovary0 ± 00 of 4 0.40None
Testis4 ± 11 of 4 2.60None
Male accessory glands7 ± 20 of 4 4.40Up
Virgin spermatheca3 ± 10 of 4 1.97None
Mated spermatheca3 ± 10 of 4 1.92None
Adult carcass8 ± 20 of 4 4.90None
Larval CNS2 ± 10 of 4 1.32None
Larval Salivary gland8 ± 10 of 4 4.65Up
Larval midgut1 ± 00 of 4 0.61None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut8 ± 22 of 4 4.87Up
Larval fat body6 ± 20 of 4 3.40None
Larval trachea6 ± 32 of 4 3.39None
Larval carcass3 ± 10 of 4 1.93None
S2 cells (growing)1 ± 00 of 4 0.76None
Whole fly1 ± 10 of 4

Looking for CG8172-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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