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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8173-RA through 18771 annotations produced 1 hits



(CG8173):

Annotation Number : CG8173
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030864
Gbrowse : chrX:17601433-17603691 (-) // 100.0 //
Probeset : 1639349_at
Accessions : protein= NP_573239;, nucleotide= NM_133011;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0030864.
BDGP gene expression has embryonic in situ data for CG8173: 11 pix of staining in 9 body parts.
Homophila reports that CG8173 is a close match (2e-12) to human gene (NP_109587), a gene associated with .
BioGrid reports that CG8173 interacts with CG8367 CG8863 CG9277 .
TRiP has 2 RNAi stocks for FBgn0030864 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 14 of 4 0.30Down
Head24 ± 31 of 4 0.10Down
Eye10 ± 22 of 4 0.04Down
Thoracicoabdominal ganglion63 ± 54 of 4 0.30Down
Salivary gland15 ± 50 of 4 0.06Down
Crop8 ± 10 of 4 0.00Down
Midgut18 ± 20 of 4 0.10Down
Tubule7 ± 20 of 4 0.00Down
Hindgut11 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body7 ± 70 of 4 0.03Down
Ovary585 ± 64 of 4 2.50Up
Testis107 ± 34 of 4 0.50Down
Male accessory glands9 ± 20 of 4 0.00Down
Virgin spermatheca8 ± 20 of 4 0.03Down
Mated spermatheca6 ± 30 of 4 0.03Down
Adult carcass17 ± 60 of 4 0.10Down
Larval CNS206 ± 114 of 4 0.89None
Larval Salivary gland5 ± 10 of 4 0.02Down
Larval midgut22 ± 30 of 4 0.10Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut25 ± 20 of 4 0.11Down
Larval fat body69 ± 74 of 4 0.30Down
Larval trachea80 ± 124 of 4 0.35Down
Larval carcass41 ± 42 of 4 0.18Down
S2 cells (growing)131 ± 24 of 4 0.56Down
Whole fly232 ± 94 of 4

Looking for CG8173-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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