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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8176-RB through 18771 annotations produced 1 hits



/// (CG8165 /// CG8176):

Annotation Number : CG8176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037702
Gbrowse : chr3R:5341757-5352959 (+) // 100.0 //
Probeset : 1630227_a_at
Accessions : protein= NP_001097723; /// NP_001097724; /// NP_788612; /// NP_788613;, nucleotide= NM_001104253; /// NM_001104254; /// NM_176435; /// NM_176436;
Pathway : 0030131 // clathrin adaptor complex // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0037702.
VDRC has 2 RNAi stocks for FBgn0037702 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain452 64 of 4 2.30Up
Head212 74 of 4 1.10None
Eye125 24 of 4 0.65Down
Thoracicoabdominal ganglion483 74 of 4 2.50Up
Salivary gland190 74 of 4 0.98None
Crop150 54 of 4 0.80Down
Midgut117 64 of 4 0.60Down
Tubule115 34 of 4 0.60Down
Hindgut221 104 of 4 1.10None
Heart164 74 of 4 0.85None
Fat body108 124 of 4 0.56Down
Ovary426 74 of 4 2.20Up
Testis279 144 of 4 1.40Up
Male accessory glands107 54 of 4 0.60Down
Virgin spermatheca80 64 of 4 0.41Down
Mated spermatheca98 94 of 4 0.51Down
Adult carcass128 24 of 4 0.70Down
Larval CNS326 384 of 4 1.68Up
Larval Salivary gland217 184 of 4 1.12None
Larval midgut236 174 of 4 1.22None
Larval tubule383 244 of 4 2.00Up
Larval hindgut229 44 of 4 1.18None
Larval fat body281 154 of 4 1.50Up
Larval trachea94 104 of 4 0.49Down
Larval carcass123 64 of 4 0.63Down
S2 cells (growing)306 44 of 4 1.58Up
Whole fly194 144 of 4

Looking for CG8176-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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