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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8180-RA through 18771 annotations produced 1 hits



(CG8180):

Annotation Number : CG8180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034021
Gbrowse : chr2R:11359969-11370338 (-) // 100.0 //
Probeset : 1629887_at
Accessions : protein= NP_611039;, nucleotide= NM_137195;
FlyMine data for FBgn0034021.
BDGP gene expression has embryonic in situ data for CG8180: 14 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0034021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 24 of 4 0.20Down
Head73 54 of 4 0.30Down
Eye96 54 of 4 0.34Down
Thoracicoabdominal ganglion72 34 of 4 0.30Down
Salivary gland13 60 of 4 0.05Down
Crop508 324 of 4 1.80Up
Midgut12 30 of 4 0.00Down
Tubule8 20 of 4 0.00Down
Hindgut103 24 of 4 0.40Down
Heart11 20 of 4 0.04Down
Fat body13 51 of 4 0.05Down
Ovary564 244 of 4 2.00Up
Testis42 34 of 4 0.20Down
Male accessory glands21 60 of 4 0.10Down
Virgin spermatheca9 10 of 4 0.03Down
Mated spermatheca11 20 of 4 0.04Down
Adult carcass71 104 of 4 0.30Down
Larval CNS39 54 of 4 0.14Down
Larval Salivary gland58 93 of 4 0.21Down
Larval midgut12 20 of 4 0.04Down
Larval tubule7 10 of 4 0.00Down
Larval hindgut226 244 of 4 0.81None
Larval fat body17 80 of 4 0.10Down
Larval trachea237 214 of 4 0.84None
Larval carcass90 64 of 4 0.32Down
S2 cells (growing)4 00 of 4 0.02Down
Whole fly280 224 of 4

Looking for CG8180-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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