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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8182-RA through 18771 annotations produced 1 hits



polypeptide GalNAc transferase 1 (GalNAc-T1):

Annotation Number : CG8182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034025
Gbrowse : chr2R:11399217-11403102 (+) // 100.0 //
Probeset : 1641078_s_at
Accessions : protein= NP_611043; /// NP_725472;, nucleotide= NM_137199; /// NM_166099;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004653 // polypept
FlyMine data for FBgn0034025.
BDGP gene expression has embryonic in situ data for GalNAc-T1: 13 pix of staining in 18 body parts.
Homophila reports that CG8182 is a close match (2e-92) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).
VDRC has 3 RNAi stocks for FBgn0034025 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 ± 24 of 4 0.90None
Head91 ± 54 of 4 0.70Down
Eye156 ± 54 of 4 1.14None
Thoracicoabdominal ganglion104 ± 44 of 4 0.80Down
Salivary gland902 ± 454 of 4 6.56Up
Crop106 ± 24 of 4 0.80Down
Midgut43 ± 34 of 4 0.30Down
Tubule67 ± 34 of 4 0.50Down
Hindgut62 ± 04 of 4 0.50Down
Heart132 ± 44 of 4 0.97None
Fat body79 ± 34 of 4 0.58Down
Ovary297 ± 64 of 4 2.20Up
Testis56 ± 44 of 4 0.40Down
Male accessory glands145 ± 54 of 4 1.10None
Virgin spermatheca145 ± 34 of 4 1.06None
Mated spermatheca164 ± 64 of 4 1.19None
Adult carcass72 ± 34 of 4 0.50Down
Larval CNS116 ± 144 of 4 0.85None
Larval Salivary gland4109 ± 2024 of 429.89Up
Larval midgut53 ± 04 of 4 0.39Down
Larval tubule80 ± 14 of 4 0.60Down
Larval hindgut126 ± 44 of 4 0.92None
Larval fat body173 ± 94 of 4 1.30Up
Larval trachea306 ± 84 of 4 2.23Up
Larval carcass467 ± 424 of 4 3.40Up
S2 cells (growing)146 ± 34 of 4 1.07None
Whole fly137 ± 84 of 4

Looking for CG8182-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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