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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8183-RB through 18771 annotations produced 2 hits



kinesin-73 (Khc-73):

Annotation Number : CG8183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019968
Gbrowse : chr2R:11405211-11419743 (-) // 100.0 //
Probeset : 1639305_a_at
Accessions : protein= NP_609201; /// NP_788356;, nucleotide= NM_135357; /// NM_176176;
Pathway : 0000235 // astral microtubule // inferred from direct assay /// 0005871 // kinesin complex // inferred from sequence or
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from elec
FlyMine data for FBgn0019968.
Homophila reports that CG8183 is a close match (3e-52) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
TRiP has 2 RNAi stocks for FBgn0019968 available for purchase.
VDRC has 1 RNAi stocks for FBgn0019968 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 ± 124 of 4 1.10None
Head143 ± 74 of 4 1.10None
Eye171 ± 84 of 4 1.33Up
Thoracicoabdominal ganglion156 ± 94 of 4 1.20None
Salivary gland1127 ± 864 of 4 8.76Up
Crop218 ± 104 of 4 1.70Up
Midgut278 ± 84 of 4 2.20Up
Tubule275 ± 54 of 4 2.10Up
Hindgut381 ± 84 of 4 3.00Up
Heart174 ± 114 of 4 1.36Up
Fat body172 ± 154 of 4 1.34Up
Ovary277 ± 34 of 4 2.20Up
Testis56 ± 44 of 4 0.40Down
Male accessory glands104 ± 104 of 4 0.80None
Virgin spermatheca196 ± 84 of 4 1.52Up
Mated spermatheca205 ± 54 of 4 1.59Up
Adult carcass174 ± 74 of 4 1.40Up
Larval CNS121 ± 44 of 4 0.95None
Larval Salivary gland248 ± 84 of 4 1.93Up
Larval midgut422 ± 154 of 4 3.28Up
Larval tubule290 ± 54 of 4 2.30Up
Larval hindgut381 ± 84 of 4 2.96Up
Larval fat body464 ± 184 of 4 3.60Up
Larval trachea146 ± 124 of 4 1.14None
Larval carcass232 ± 164 of 4 1.81Up
S2 cells (growing)154 ± 14 of 4 1.20Up
Whole fly128 ± 74 of 4



kinesin-73 (Khc-73):

Annotation Number : CG8183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019968
Gbrowse : chr2R:11403282-11419743 (-) // 100.0 //
Probeset : 1627136_at
Accessions : protein= NP_609201; /// NP_788356;, nucleotide= NM_135357; /// NM_176176;
Pathway : 0000235 // astral microtubule // inferred from direct assay /// 0005871 // kinesin complex // inferred from sequence or
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from elec
FlyMine data for FBgn0019968.
Homophila reports that CG8183 is a close match (3e-52) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
TRiP has 2 RNAi stocks for FBgn0019968 available for purchase.
VDRC has 1 RNAi stocks for FBgn0019968 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1054 ± 294 of 424.40Up
Head226 ± 114 of 4 5.20Up
Eye206 ± 224 of 4 4.77Up
Thoracicoabdominal ganglion978 ± 314 of 422.60Up
Salivary gland43 ± 34 of 4 1.01None
Crop25 ± 24 of 4 0.60Down
Midgut19 ± 03 of 4 0.40Down
Tubule11 ± 01 of 4 0.30Down
Hindgut50 ± 24 of 4 1.20None
Heart22 ± 24 of 4 0.52Down
Fat body28 ± 54 of 4 0.66Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands18 ± 22 of 4 0.40Down
Virgin spermatheca29 ± 24 of 4 0.67Down
Mated spermatheca20 ± 24 of 4 0.48Down
Adult carcass35 ± 73 of 4 0.80None
Larval CNS582 ± 334 of 413.47Up
Larval Salivary gland22 ± 34 of 4 0.51Down
Larval midgut13 ± 03 of 4 0.31Down
Larval tubule14 ± 22 of 4 0.30Down
Larval hindgut24 ± 24 of 4 0.57Down
Larval fat body13 ± 43 of 4 0.30Down
Larval trachea25 ± 54 of 4 0.59Down
Larval carcass24 ± 14 of 4 0.57Down
S2 cells (growing)7 ± 03 of 4 0.18Down
Whole fly43 ± 24 of 4

Looking for CG8183-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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