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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8192-RA through 18771 annotations produced 1 hits



(CG8192):

Annotation Number : CG8192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034030
Gbrowse : chr2R:11431819-11437485 (-) // 100.0 //
Probeset : 1632091_at
Accessions : protein= NP_611047;, nucleotide= NM_137203;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0034030.
VDRC has 1 RNAi stocks for FBgn0034030 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30None
Head8 10 of 4 0.70None
Eye8 21 of 4 0.80None
Thoracicoabdominal ganglion8 20 of 4 0.70None
Salivary gland16 50 of 4 1.43None
Crop34 13 of 4 3.00Up
Midgut7 10 of 4 0.60None
Tubule4 00 of 4 0.40Down
Hindgut4 10 of 4 0.40Down
Heart4 10 of 4 0.40Down
Fat body5 20 of 4 0.46Down
Ovary1 00 of 4 0.20Down
Testis8 10 of 4 0.70None
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca5 10 of 4 0.45Down
Mated spermatheca8 10 of 4 0.74None
Adult carcass37 40 of 4 3.30Up
Larval CNS8 10 of 4 0.76None
Larval Salivary gland8 10 of 4 0.72None
Larval midgut3 00 of 4 0.29Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut7 30 of 4 0.68None
Larval fat body5 10 of 4 0.50Down
Larval trachea162 94 of 414.50Up
Larval carcass42 41 of 4 3.82Up
S2 cells (growing)4 10 of 4 0.38Down
Whole fly11 10 of 4

Looking for CG8192-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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