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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8203-RA through 18771 annotations produced 1 hits



Cyclin-dependent kinase 5 (Cdk5):

Annotation Number : CG8203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013762
Gbrowse : chr2R:11457034-11458918 (-) // 100.0 //
Probeset : 1637085_at
Accessions : protein= NP_477080;, nucleotide= NM_057732;
Pathway : 0016533 // cyclin-dependent protein kinase 5 holoenzyme complex // inferred from physical interaction
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0013762.
Homophila reports that CG8203 is a close match (6e-11) to human gene IPD1;IRAK4;REN64 (NP_057207), a gene associated with Invasive pneumococcal disease, recurrent isolated, 1, 610799 (3);IRAK4 deficiency, 607676 (3).
BioGrid reports that CG8203 interacts with CG9012 CG9096 CG5387 CG5387 CG5708 CG13510 CG5825 CG8993 CG15861 CG14534 CG13558 CG2948 CG17508 CG31204 CG11182 CG6191 CG3629 CG7948 CG5568 CG5731 CG10308 CG31679 CG2865 CG11963 CG7281 CG9930 CG14619 CG6488 CG2189 CG3938 CG4673 CG3193 CG5009 CG15112 CG17309 CG13900 CG17964 CG1765 CG4858 CG8181 .
TRiP has 2 RNAi stocks for FBgn0013762 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 114 of 4 1.30Up
Head223 104 of 4 1.20None
Eye241 34 of 4 1.30Up
Thoracicoabdominal ganglion251 54 of 4 1.30Up
Salivary gland191 54 of 4 1.03None
Crop187 54 of 4 1.00None
Midgut207 74 of 4 1.10None
Tubule165 34 of 4 0.90Down
Hindgut167 34 of 4 0.90None
Heart179 124 of 4 0.96None
Fat body213 124 of 4 1.15None
Ovary352 104 of 4 1.90Up
Testis29 14 of 4 0.20Down
Male accessory glands145 44 of 4 0.80Down
Virgin spermatheca242 114 of 4 1.30Up
Mated spermatheca254 84 of 4 1.37Up
Adult carcass149 84 of 4 0.80None
Larval CNS329 74 of 4 1.76Up
Larval Salivary gland216 84 of 4 1.16None
Larval midgut211 84 of 4 1.13None
Larval tubule244 74 of 4 1.30Up
Larval hindgut175 84 of 4 0.94None
Larval fat body286 234 of 4 1.50Up
Larval trachea202 64 of 4 1.09None
Larval carcass143 44 of 4 0.77Down
S2 cells (growing)205 34 of 4 1.10None
Whole fly186 134 of 4

Looking for CG8203-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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