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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8205-RC through 18771 annotations produced 1 hits



fusilli (fus):

Annotation Number : CG8205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023441
Gbrowse : chr2R:11544967-11564173 (-) // 99.72 //
Probeset : 1630930_a_at
Accessions : protein= NP_001163161; /// NP_524691; /// NP_725479; /// NP_725480; /// NP_725481; /// NP_725482; /// NP_725483;, nucleotide= NM_001169690; /// NM_079952; /// NM_166105; /// NM_166106; /// NM_166107; /// NM_166108; /// NM_166109;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0023441.
BDGP gene expression has embryonic in situ data for fus: 29 pix of staining in 9 body parts.
BioGrid reports that CG8205 interacts with CG5848 CG10079 .
VDRC has 1 RNAi stocks for FBgn0023441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 23 of 4 0.10Down
Head196 ± 194 of 4 1.00None
Eye211 ± 134 of 4 1.08None
Thoracicoabdominal ganglion12 ± 23 of 4 0.10Down
Salivary gland177 ± 124 of 4 0.91None
Crop565 ± 214 of 4 2.90Up
Midgut97 ± 14 of 4 0.50Down
Tubule60 ± 14 of 4 0.30Down
Hindgut255 ± 74 of 4 1.30Up
Heart1129 ± 304 of 4 5.77Up
Fat body1039 ± 1384 of 4 5.31Up
Ovary76 ± 34 of 4 0.40Down
Testis170 ± 84 of 4 0.90None
Male accessory glands84 ± 64 of 4 0.40Down
Virgin spermatheca563 ± 374 of 4 2.88Up
Mated spermatheca544 ± 344 of 4 2.78Up
Adult carcass731 ± 454 of 4 3.70Up
Larval CNS14 ± 24 of 4 0.07Down
Larval Salivary gland177 ± 84 of 4 0.91None
Larval midgut79 ± 34 of 4 0.41Down
Larval tubule81 ± 34 of 4 0.40Down
Larval hindgut90 ± 54 of 4 0.46Down
Larval fat body114 ± 134 of 4 0.60Down
Larval trachea199 ± 144 of 4 1.02None
Larval carcass118 ± 124 of 4 0.60Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly195 ± 104 of 4

Looking for CG8205-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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